Wall clock time and date at job start Mon Mar 30 2020 02:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86794 * 120.00291 * 2 1 4 4 H 1.48498 * 109.47321 * 274.98577 * 3 2 1 5 5 H 1.48498 * 109.47144 * 34.98493 * 3 2 1 6 6 H 1.48500 * 109.47526 * 154.98740 * 3 2 1 7 7 C 1.40414 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99654 * 186.14685 * 7 2 1 9 9 C 1.40518 * 120.00327 * 6.13773 * 7 2 1 10 10 N 1.34179 * 121.36247 * 353.59058 * 9 7 2 11 11 C 1.31609 * 121.17694 * 179.97438 * 10 9 7 12 12 N 1.31498 * 123.89787 * 359.97438 * 11 10 9 13 13 C 1.33539 * 121.34032 * 0.04847 * 12 11 10 14 14 C 1.41011 * 122.13262 * 180.02562 * 13 12 11 15 15 O 1.35732 * 120.30432 * 0.22260 * 14 13 12 16 16 C 1.37935 * 119.38969 * 179.97438 * 14 13 12 17 17 C 1.38966 * 120.85008 * 359.97438 * 16 14 13 18 18 C 1.37894 * 120.85100 * 359.97438 * 17 16 14 19 19 C 1.39134 * 119.64913 * 0.02562 * 18 17 16 20 20 H 0.97003 * 120.00364 * 359.97438 * 1 2 3 21 21 H 1.07999 * 118.05046 * 179.97438 * 11 10 9 22 22 H 0.96701 * 114.00270 * 269.72848 * 15 14 13 23 23 H 1.08005 * 119.57416 * 179.97438 * 16 14 13 24 24 H 1.07999 * 119.57578 * 179.97438 * 17 16 14 25 25 H 1.07992 * 120.17638 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6176 0.0000 4 1 2.3814 2.1072 -1.3947 5 1 1.4934 2.6199 0.8027 6 1 3.5855 1.4120 0.5920 7 6 2.0072 -1.2161 -0.0005 8 1 3.0826 -1.2188 0.0996 9 6 1.3107 -2.4294 -0.1312 10 7 -0.0306 -2.4684 -0.1296 11 6 -0.6792 -3.6069 -0.2527 12 7 -0.0910 -4.7755 -0.3851 13 6 1.2397 -4.8853 -0.4027 14 6 1.8879 -6.1295 -0.5443 15 8 1.1619 -7.2692 -0.6733 16 6 3.2663 -6.1773 -0.5557 17 6 4.0207 -5.0170 -0.4302 18 6 3.4103 -3.7883 -0.2916 19 6 2.0214 -3.7075 -0.2765 20 1 -0.4851 0.8400 0.0004 21 1 -1.7589 -3.5797 -0.2445 22 1 0.9556 -7.7013 0.1668 23 1 3.7659 -7.1288 -0.6636 24 1 5.0989 -5.0783 -0.4414 25 1 4.0071 -2.8935 -0.1953 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261297339.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:17 Heat of formation + Delta-G solvation = 6.102395 kcal Electronic energy + Delta-G solvation = -13613.258006 eV Core-core repulsion = 11170.396379 eV Total energy + Delta-G solvation = -2442.861627 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.50311 -37.13763 -35.25949 -34.40651 -31.63501 -30.04449 -28.17254 -26.78341 -23.00990 -22.67037 -20.82776 -18.37195 -17.50370 -17.17608 -15.51430 -15.45277 -14.84580 -13.97011 -13.76404 -13.48209 -12.97566 -12.67456 -11.98268 -11.63407 -11.62097 -11.28381 -10.99941 -10.80840 -10.52858 -10.08330 -9.90140 -9.04011 -9.00125 -8.08816 -7.55625 -7.18975 -6.76859 -5.08641 1.58330 2.10685 2.73673 2.84173 2.88899 3.25220 3.58540 4.10391 4.51241 5.02320 5.45451 5.64850 5.71672 5.87362 6.01086 6.06878 6.17203 6.54969 6.65041 6.77690 7.02086 7.09018 7.31129 7.41723 7.67762 7.69471 8.08100 8.43784 8.44323 8.98438 9.72099 10.13317 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.043338 B = 0.009820 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.927870 B = 2850.688429 C = 3481.883206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.671 5.671 2 C 0.056 3.944 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.362 4.362 8 H 0.099 0.901 9 C 0.270 3.730 10 N -0.561 5.561 11 C 0.322 3.678 12 N -0.637 5.637 13 C 0.178 3.822 14 C 0.058 3.942 15 O -0.485 6.485 16 C -0.114 4.114 17 C -0.187 4.187 18 C -0.055 4.055 19 C -0.201 4.201 20 H 0.286 0.714 21 H 0.155 0.845 22 H 0.371 0.629 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 -0.690 1.329 5.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.289 5.289 2 C -0.175 4.175 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.394 4.394 8 H 0.117 0.883 9 C 0.140 3.860 10 N -0.284 5.284 11 C 0.031 3.969 12 N -0.364 5.364 13 C 0.050 3.950 14 C 0.011 3.989 15 O -0.293 6.293 16 C -0.135 4.135 17 C -0.207 4.207 18 C -0.074 4.074 19 C -0.209 4.209 20 H 0.097 0.903 21 H 0.172 0.828 22 H 0.224 0.776 23 H 0.132 0.868 24 H 0.129 0.871 25 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.700 -0.441 0.730 3.797 hybrid contribution 1.106 0.493 0.457 1.295 sum 4.807 0.053 1.187 4.951 Atomic orbital electron populations 1.70015 1.07779 1.29501 1.21624 1.26372 0.95186 1.02021 0.93943 0.86059 0.80574 0.79301 0.79739 1.18795 1.19428 1.17818 1.19878 0.95593 0.89220 1.34688 0.88277 1.19962 0.88713 0.89862 0.87458 1.69400 1.07605 1.26221 1.25218 1.24320 0.99824 0.84363 0.88410 1.68374 1.08929 1.28519 1.30534 1.19011 0.90653 0.91787 0.93538 1.18053 0.88748 0.84452 1.07603 1.84766 1.74119 1.36944 1.33452 1.21048 0.92639 0.98409 1.01381 1.20594 0.98568 0.92246 1.09337 1.20910 0.93531 0.97003 0.95967 1.20434 0.94478 0.96079 1.09917 0.90278 0.82817 0.77585 0.86782 0.87057 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -16.14 11.58 55.57 0.64 -15.50 15 2 C 0.06 1.28 5.49 -17.29 -0.10 1.18 15 3 Si 0.92 16.22 29.57 -169.99 -5.03 11.19 15 4 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 5 H -0.27 -4.65 7.11 56.52 0.40 -4.24 15 6 H -0.25 -4.35 7.11 56.52 0.40 -3.95 15 7 C -0.36 -8.73 8.88 -37.90 -0.34 -9.07 15 8 H 0.10 2.14 6.39 -52.49 -0.34 1.80 15 9 C 0.27 7.14 6.75 -82.45 -0.56 6.58 15 10 N -0.56 -15.24 8.11 -11.19 -0.09 -15.33 15 11 C 0.32 8.24 12.16 -92.57 -1.13 7.11 15 12 N -0.64 -16.57 10.21 -12.58 -0.13 -16.70 15 13 C 0.18 4.50 6.65 -84.67 -0.56 3.94 15 14 C 0.06 1.29 6.76 -38.64 -0.26 1.03 15 15 O -0.49 -9.81 13.34 -18.90 -0.25 -10.06 15 16 C -0.11 -2.19 9.94 -39.42 -0.39 -2.58 15 17 C -0.19 -3.51 10.01 -39.44 -0.39 -3.90 15 18 C -0.05 -1.15 9.51 -39.37 -0.37 -1.53 15 19 C -0.20 -5.02 5.91 -104.63 -0.62 -5.64 15 20 H 0.29 6.06 8.29 -40.82 -0.34 5.72 15 21 H 0.15 3.45 8.06 -52.49 -0.42 3.03 15 22 H 0.37 5.74 9.06 45.56 0.41 6.15 15 23 H 0.11 1.83 8.06 -52.48 -0.42 1.41 15 24 H 0.11 1.70 8.06 -52.49 -0.42 1.27 15 25 H 0.12 2.26 6.58 -52.49 -0.35 1.91 15 LS Contribution 230.70 15.07 3.48 3.48 Total: -1.00 -30.15 230.70 -6.76 -36.91 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -0.67 Total: 8.88 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -4.72 Total: -2.87 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.42 Total: -47.53 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.25 Total: -10.06 kcal Atomic # 14 Polarization: 16.22 SS G_CDS: -5.03 Total: 11.19 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.15 -6.76 -36.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297339.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.015 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds