Wall clock time and date at job start Mon Mar 30 2020 02:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86794 * 120.00291 * 2 1 4 4 H 1.48498 * 109.47321 * 274.98577 * 3 2 1 5 5 H 1.48498 * 109.47144 * 34.98493 * 3 2 1 6 6 H 1.48500 * 109.47526 * 154.98740 * 3 2 1 7 7 C 1.40414 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99654 * 186.14685 * 7 2 1 9 9 C 1.40518 * 120.00327 * 6.13773 * 7 2 1 10 10 N 1.34179 * 121.36247 * 353.59058 * 9 7 2 11 11 C 1.31609 * 121.17694 * 179.97438 * 10 9 7 12 12 N 1.31498 * 123.89787 * 359.97438 * 11 10 9 13 13 C 1.33539 * 121.34032 * 0.04847 * 12 11 10 14 14 C 1.41011 * 122.13262 * 180.02562 * 13 12 11 15 15 O 1.35732 * 120.30432 * 0.22260 * 14 13 12 16 16 C 1.37935 * 119.38969 * 179.97438 * 14 13 12 17 17 C 1.38966 * 120.85008 * 359.97438 * 16 14 13 18 18 C 1.37894 * 120.85100 * 359.97438 * 17 16 14 19 19 C 1.39134 * 119.64913 * 0.02562 * 18 17 16 20 20 H 0.97003 * 120.00364 * 359.97438 * 1 2 3 21 21 H 1.07999 * 118.05046 * 179.97438 * 11 10 9 22 22 H 0.96701 * 114.00270 * 269.72848 * 15 14 13 23 23 H 1.08005 * 119.57416 * 179.97438 * 16 14 13 24 24 H 1.07999 * 119.57578 * 179.97438 * 17 16 14 25 25 H 1.07992 * 120.17638 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6176 0.0000 4 1 2.3814 2.1072 -1.3947 5 1 1.4934 2.6199 0.8027 6 1 3.5855 1.4120 0.5920 7 6 2.0072 -1.2161 -0.0005 8 1 3.0826 -1.2188 0.0996 9 6 1.3107 -2.4294 -0.1312 10 7 -0.0306 -2.4684 -0.1296 11 6 -0.6792 -3.6069 -0.2527 12 7 -0.0910 -4.7755 -0.3851 13 6 1.2397 -4.8853 -0.4027 14 6 1.8879 -6.1295 -0.5443 15 8 1.1619 -7.2692 -0.6733 16 6 3.2663 -6.1773 -0.5557 17 6 4.0207 -5.0170 -0.4302 18 6 3.4103 -3.7883 -0.2916 19 6 2.0214 -3.7075 -0.2765 20 1 -0.4851 0.8400 0.0004 21 1 -1.7589 -3.5797 -0.2445 22 1 0.9556 -7.7013 0.1668 23 1 3.7659 -7.1288 -0.6636 24 1 5.0989 -5.0783 -0.4414 25 1 4.0071 -2.8935 -0.1953 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261297339.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:16 Heat of formation + Delta-G solvation = -14.588306 kcal Electronic energy + Delta-G solvation = -13614.155222 eV Core-core repulsion = 11170.396379 eV Total energy + Delta-G solvation = -2443.758843 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.23775 -38.81845 -36.89453 -36.15761 -33.44399 -31.77483 -29.84076 -28.58209 -24.76317 -24.41021 -22.53256 -20.12086 -19.10358 -18.94751 -17.21423 -17.11513 -16.45383 -15.64243 -15.38770 -15.11612 -14.77265 -14.36646 -13.54542 -13.23108 -13.14539 -12.96861 -12.57988 -12.43922 -11.96305 -11.75483 -11.51883 -10.84435 -10.80002 -9.80800 -9.37313 -8.89590 -8.53981 -6.92629 -0.11209 0.40076 1.20184 1.39842 1.58317 1.64407 2.12038 2.42793 2.80811 3.45643 3.75035 3.84574 4.08190 4.18321 4.29991 4.50240 4.59806 4.84455 4.97300 5.16541 5.34438 5.50177 5.68150 5.71310 5.90472 6.05990 6.33305 6.60774 6.91641 7.18475 8.06818 8.25870 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.043338 B = 0.009820 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.927870 B = 2850.688429 C = 3481.883206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.012 3.988 3 Si 1.005 2.995 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.241 1.241 7 C -0.376 4.376 8 H 0.120 0.880 9 C 0.231 3.769 10 N -0.592 5.592 11 C 0.302 3.698 12 N -0.655 5.655 13 C 0.132 3.868 14 C 0.046 3.954 15 O -0.494 6.494 16 C -0.104 4.104 17 C -0.163 4.163 18 C -0.068 4.068 19 C -0.227 4.227 20 H 0.295 0.705 21 H 0.169 0.831 22 H 0.391 0.609 23 H 0.155 0.845 24 H 0.160 0.840 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 -0.529 1.358 7.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.216 4.216 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.163 1.163 7 C -0.407 4.407 8 H 0.138 0.862 9 C 0.101 3.899 10 N -0.317 5.317 11 C 0.010 3.990 12 N -0.383 5.383 13 C 0.007 3.993 14 C -0.001 4.001 15 O -0.304 6.304 16 C -0.124 4.124 17 C -0.183 4.183 18 C -0.088 4.088 19 C -0.235 4.235 20 H 0.106 0.894 21 H 0.186 0.814 22 H 0.247 0.753 23 H 0.173 0.827 24 H 0.177 0.823 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.617 -0.337 0.770 6.670 hybrid contribution 0.265 0.316 0.447 0.609 sum 6.882 -0.021 1.217 6.989 Atomic orbital electron populations 1.70096 1.09802 1.31208 1.22010 1.27489 0.95901 1.05541 0.92629 0.84838 0.79394 0.73759 0.79781 1.18495 1.18813 1.16331 1.20409 0.96742 0.89412 1.34172 0.86188 1.20538 0.89021 0.91589 0.88724 1.69369 1.08623 1.26800 1.26875 1.24631 1.00659 0.84536 0.89142 1.68354 1.09977 1.28486 1.31473 1.19587 0.90706 0.93577 0.95473 1.18325 0.90094 0.83885 1.07802 1.84694 1.74249 1.36250 1.35184 1.21498 0.91336 1.00495 0.99081 1.21149 1.00893 0.90790 1.05450 1.21202 0.92108 0.99112 0.96334 1.20703 0.96311 0.95465 1.10995 0.89351 0.81383 0.75302 0.82716 0.82262 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -35.06 11.58 21.90 0.25 -34.80 15 2 C 0.01 0.55 5.49 85.42 0.47 1.02 15 3 Si 1.01 32.20 29.57 68.60 2.03 34.22 15 4 H -0.26 -8.18 7.11 99.48 0.71 -7.47 15 5 H -0.26 -8.13 7.11 99.48 0.71 -7.42 15 6 H -0.24 -7.10 7.11 99.48 0.71 -6.39 15 7 C -0.38 -18.20 8.88 23.36 0.21 -17.99 15 8 H 0.12 5.05 6.39 -2.91 -0.02 5.03 15 9 C 0.23 12.55 6.75 41.63 0.28 12.83 15 10 N -0.59 -33.69 8.11 -189.31 -1.54 -35.23 15 11 C 0.30 16.28 12.16 181.03 2.20 18.49 15 12 N -0.66 -35.42 10.21 -193.71 -1.98 -37.40 15 13 C 0.13 6.78 6.65 40.47 0.27 7.05 15 14 C 0.05 1.99 6.76 22.88 0.15 2.14 15 15 O -0.49 -19.40 13.34 -90.55 -1.21 -20.61 15 16 C -0.10 -3.61 9.94 22.37 0.22 -3.38 15 17 C -0.16 -5.42 10.01 22.36 0.22 -5.20 15 18 C -0.07 -2.75 9.51 22.40 0.21 -2.54 15 19 C -0.23 -11.45 5.91 -19.87 -0.12 -11.57 15 20 H 0.30 12.75 8.29 -92.71 -0.77 11.98 15 21 H 0.17 8.06 8.06 -2.91 -0.02 8.03 15 22 H 0.39 11.63 9.06 -74.06 -0.67 10.96 15 23 H 0.16 4.10 8.06 -2.91 -0.02 4.08 15 24 H 0.16 3.80 8.06 -2.91 -0.02 3.78 15 25 H 0.14 4.88 6.58 -2.91 -0.02 4.86 15 Total: -1.00 -67.79 230.70 2.26 -65.53 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.57 Total: 27.43 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.12 Total: 0.85 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -3.26 Total: -107.43 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.21 Total: -20.61 kcal Atomic # 14 Polarization: 32.20 SS G_CDS: 2.03 Total: 34.22 kcal Total: -67.79 2.26 -65.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297339.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.941 kcal (2) G-P(sol) polarization free energy of solvation -67.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds