Wall clock time and date at job start Mon Mar 30 2020 02:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33995 * 126.90997 * 2 1 4 4 O 1.34452 * 110.15631 * 180.02562 * 3 2 1 5 5 C 1.34801 * 110.89023 * 0.02562 * 4 3 2 6 6 C 1.38946 * 133.49878 * 180.02562 * 5 4 3 7 7 C 1.37846 * 119.81951 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.65477 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47268 * 269.98013 * 8 7 6 10 10 H 1.07999 * 119.99665 * 0.02562 * 9 8 7 11 11 C 1.37884 * 120.00157 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99387 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99903 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47190 * 60.00480 * 13 11 9 15 15 H 1.48510 * 109.46713 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47596 * 300.00116 * 13 11 9 17 17 C 1.38737 * 120.68414 * 0.02562 * 7 6 5 18 18 C 1.36740 * 120.42166 * 0.02562 * 17 7 6 19 19 C 1.39405 * 119.71138 * 0.26388 * 18 17 7 20 20 H 1.09008 * 109.47180 * 89.97464 * 1 2 3 21 21 H 1.09000 * 109.47210 * 209.97139 * 1 2 3 22 22 H 1.08999 * 109.47124 * 329.97266 * 1 2 3 23 23 H 1.08006 * 124.91894 * 0.03023 * 3 2 1 24 24 H 1.08002 * 120.08612 * 359.97438 * 6 5 4 25 25 H 1.08998 * 109.47459 * 29.98380 * 8 7 6 26 26 H 1.09001 * 109.47158 * 149.97993 * 8 7 6 27 27 H 0.97000 * 119.99126 * 179.97438 * 12 11 9 28 28 H 1.08001 * 119.78859 * 180.02562 * 17 7 6 29 29 H 1.08002 * 120.14132 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3117 1.0714 0.0000 4 8 3.5991 0.6838 -0.0006 5 6 3.6963 -0.6607 -0.0015 6 6 4.7706 -1.5419 -0.0019 7 6 4.5421 -2.9013 -0.0024 8 6 5.7099 -3.8537 -0.0023 9 6 6.0995 -4.1711 -1.4230 10 1 5.5560 -3.7272 -2.2440 11 6 7.1498 -5.0283 -1.6749 12 7 7.8118 -5.5684 -0.6751 13 14 7.6321 -5.4222 -3.4359 14 1 8.0153 -4.1701 -4.1362 15 1 8.7831 -6.3607 -3.4357 16 1 6.4820 -6.0488 -4.1359 17 6 3.2481 -3.4017 -0.0031 18 6 2.1770 -2.5516 -0.0037 19 6 2.3885 -1.1737 -0.0094 20 1 -0.3634 0.0005 -1.0277 21 1 -0.3634 -0.8902 0.5134 22 1 -0.3633 0.8897 0.5143 23 1 1.9748 2.0976 0.0005 24 1 5.7819 -1.1628 -0.0019 25 1 6.5539 -3.3937 0.5117 26 1 5.4290 -4.7731 0.5115 27 1 8.5504 -6.1717 -0.8523 28 1 3.0857 -4.4694 -0.0030 29 1 1.1716 -2.9461 -0.0047 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261298647.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:37 Heat of formation + Delta-G solvation = 9.443638 kcal Electronic energy + Delta-G solvation = -13465.324894 eV Core-core repulsion = 11126.148498 eV Total energy + Delta-G solvation = -2339.176396 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.98339 -37.60793 -33.95871 -32.99303 -30.63548 -29.86357 -27.32598 -26.53789 -23.40396 -22.51980 -20.49621 -19.52331 -16.80795 -16.42053 -16.26509 -15.70574 -14.91619 -14.29274 -13.74311 -13.33266 -13.13481 -12.92799 -12.49238 -12.35007 -11.87672 -11.38492 -11.28713 -11.15636 -10.76759 -10.61653 -10.33058 -9.71186 -9.56254 -9.17389 -8.44552 -7.98495 -7.48193 -6.06647 -4.10975 1.47725 1.99558 2.72234 3.22961 3.31684 3.35565 3.39217 4.31144 4.48480 4.77784 4.99174 5.13151 5.28095 5.45485 5.62114 5.73468 5.84506 5.87465 5.92546 6.10324 6.22281 6.47307 6.72167 6.85673 6.99757 7.08440 7.23957 7.47981 7.69876 7.77785 7.88790 8.27035 8.93680 9.52961 11.03048 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.049580 B = 0.006557 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.602842 B = 4269.048318 C = 4345.123440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.179 4.179 3 C -0.018 4.018 4 O -0.200 6.200 5 C 0.056 3.944 6 C -0.121 4.121 7 C -0.004 4.004 8 C 0.049 3.951 9 C -0.515 4.515 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.130 4.130 18 C -0.078 4.078 19 C -0.156 4.156 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.198 0.802 24 H 0.128 0.872 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.263 0.737 28 H 0.126 0.874 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.769 9.312 1.789 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.180 4.180 3 C -0.083 4.083 4 O -0.101 6.101 5 C 0.010 3.990 6 C -0.139 4.139 7 C -0.004 4.004 8 C 0.012 3.988 9 C -0.553 4.553 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.148 4.148 18 C -0.096 4.096 19 C -0.157 4.157 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.215 0.785 24 H 0.146 0.854 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.387 9.354 1.834 14.850 hybrid contribution 0.183 -0.232 -1.008 1.051 sum -11.205 9.122 0.826 14.472 Atomic orbital electron populations 1.20091 0.89218 1.02292 1.01845 1.21077 0.96246 0.91725 1.08982 1.23501 0.80378 0.99119 1.05321 1.83950 1.27756 1.21645 1.76793 1.19728 0.95735 0.80614 1.02945 1.19883 0.96248 0.90880 1.06914 1.20515 0.96577 0.93003 0.90342 1.18393 0.89738 0.92655 0.98001 1.21006 1.15486 1.27472 0.91302 0.92410 1.25005 0.96111 0.95778 0.97348 1.69947 1.21440 1.31038 1.30790 0.86569 0.78032 0.78284 0.84654 1.20134 1.21196 1.20123 1.20794 0.91859 0.99908 1.02282 1.20150 0.98853 0.90576 1.00014 1.19647 0.92283 0.94085 1.09689 0.91616 0.91599 0.91818 0.78547 0.85429 0.94972 0.94786 0.92710 0.85569 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.43 36.00 0.38 -0.45 15 2 C -0.18 -2.63 6.35 -102.66 -0.65 -3.28 15 3 C -0.02 -0.26 11.89 29.24 0.35 0.09 15 4 O -0.20 -3.52 10.58 3.92 0.04 -3.48 15 5 C 0.06 1.11 7.42 -38.47 -0.29 0.82 15 6 C -0.12 -2.54 9.70 -39.46 -0.38 -2.92 15 7 C 0.00 -0.09 5.07 -104.58 -0.53 -0.62 15 8 C 0.05 1.25 5.08 -29.04 -0.15 1.10 15 9 C -0.51 -14.36 9.09 -34.44 -0.31 -14.68 15 10 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 12 N -0.89 -26.19 13.29 55.43 0.74 -25.46 15 13 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 15 14 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 17 C -0.13 -2.57 9.62 -39.94 -0.38 -2.95 15 18 C -0.08 -1.37 10.05 -39.69 -0.40 -1.77 15 19 C -0.16 -2.83 6.38 -105.16 -0.67 -3.50 15 20 H 0.07 0.64 8.14 -51.92 -0.42 0.22 15 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.20 1.77 8.06 -52.48 -0.42 1.35 15 24 H 0.13 2.60 8.06 -52.49 -0.42 2.18 15 25 H 0.03 0.86 8.08 -51.93 -0.42 0.44 15 26 H 0.03 0.90 8.08 -51.93 -0.42 0.48 15 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 28 H 0.13 2.33 8.06 -52.49 -0.42 1.91 15 29 H 0.12 1.69 8.06 -52.49 -0.42 1.26 15 LS Contribution 260.14 15.07 3.92 3.92 Total: -1.00 -30.56 260.14 -6.80 -37.36 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -3.34 Total: -2.25 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -3.14 Total: -26.59 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.74 Total: -25.46 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.56 -6.80 -37.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298647.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.804 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds