Wall clock time and date at job start Mon Mar 30 2020 02:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33995 * 126.90997 * 2 1 4 4 O 1.34452 * 110.15631 * 180.02562 * 3 2 1 5 5 C 1.34801 * 110.89023 * 0.02562 * 4 3 2 6 6 C 1.38946 * 133.49878 * 180.02562 * 5 4 3 7 7 C 1.37846 * 119.81951 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.65477 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47268 * 269.98013 * 8 7 6 10 10 H 1.07999 * 119.99665 * 0.02562 * 9 8 7 11 11 C 1.37884 * 120.00157 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99387 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99903 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47190 * 60.00480 * 13 11 9 15 15 H 1.48510 * 109.46713 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47596 * 300.00116 * 13 11 9 17 17 C 1.38737 * 120.68414 * 0.02562 * 7 6 5 18 18 C 1.36740 * 120.42166 * 0.02562 * 17 7 6 19 19 C 1.39405 * 119.71138 * 0.26388 * 18 17 7 20 20 H 1.09008 * 109.47180 * 89.97464 * 1 2 3 21 21 H 1.09000 * 109.47210 * 209.97139 * 1 2 3 22 22 H 1.08999 * 109.47124 * 329.97266 * 1 2 3 23 23 H 1.08006 * 124.91894 * 0.03023 * 3 2 1 24 24 H 1.08002 * 120.08612 * 359.97438 * 6 5 4 25 25 H 1.08998 * 109.47459 * 29.98380 * 8 7 6 26 26 H 1.09001 * 109.47158 * 149.97993 * 8 7 6 27 27 H 0.97000 * 119.99126 * 179.97438 * 12 11 9 28 28 H 1.08001 * 119.78859 * 180.02562 * 17 7 6 29 29 H 1.08002 * 120.14132 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3117 1.0714 0.0000 4 8 3.5991 0.6838 -0.0006 5 6 3.6963 -0.6607 -0.0015 6 6 4.7706 -1.5419 -0.0019 7 6 4.5421 -2.9013 -0.0024 8 6 5.7099 -3.8537 -0.0023 9 6 6.0995 -4.1711 -1.4230 10 1 5.5560 -3.7272 -2.2440 11 6 7.1498 -5.0283 -1.6749 12 7 7.8118 -5.5684 -0.6751 13 14 7.6321 -5.4222 -3.4359 14 1 8.0153 -4.1701 -4.1362 15 1 8.7831 -6.3607 -3.4357 16 1 6.4820 -6.0488 -4.1359 17 6 3.2481 -3.4017 -0.0031 18 6 2.1770 -2.5516 -0.0037 19 6 2.3885 -1.1737 -0.0094 20 1 -0.3634 0.0005 -1.0277 21 1 -0.3634 -0.8902 0.5134 22 1 -0.3633 0.8897 0.5143 23 1 1.9748 2.0976 0.0005 24 1 5.7819 -1.1628 -0.0019 25 1 6.5539 -3.3937 0.5117 26 1 5.4290 -4.7731 0.5115 27 1 8.5504 -6.1717 -0.8523 28 1 3.0857 -4.4694 -0.0030 29 1 1.1716 -2.9461 -0.0047 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261298647.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:37 Heat of formation + Delta-G solvation = -7.579837 kcal Electronic energy + Delta-G solvation = -13466.063087 eV Core-core repulsion = 11126.148498 eV Total energy + Delta-G solvation = -2339.914590 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.31071 -39.14978 -35.52597 -34.68585 -32.32550 -31.36667 -28.79970 -27.86598 -25.29155 -24.02303 -22.07057 -20.80464 -18.53245 -18.12631 -17.75821 -17.04314 -16.70665 -15.92913 -15.18427 -14.73087 -14.50346 -14.13596 -13.92974 -13.68092 -13.31819 -13.25669 -12.93030 -12.58846 -12.54833 -12.39189 -12.00495 -11.59463 -11.46148 -10.62017 -10.59458 -9.48112 -8.90450 -8.21305 -6.35520 0.08340 0.47257 1.39256 1.42312 1.47291 1.51319 1.95012 2.38918 2.84707 3.09053 3.58914 3.74878 4.05173 4.23299 4.31295 4.49565 4.58781 4.65909 4.85410 4.90850 5.07830 5.15525 5.22980 5.30691 5.31593 5.48088 5.68047 5.71337 5.78284 5.93641 6.13164 6.30930 6.75792 7.32868 8.87239 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.049580 B = 0.006557 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.602842 B = 4269.048318 C = 4345.123440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.187 4.187 3 C -0.009 4.009 4 O -0.213 6.213 5 C 0.034 3.966 6 C -0.134 4.134 7 C -0.032 4.032 8 C 0.059 3.941 9 C -0.533 4.533 10 H 0.053 0.947 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.966 3.034 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.266 1.266 17 C -0.142 4.142 18 C -0.067 4.067 19 C -0.162 4.162 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.250 0.750 24 H 0.117 0.883 25 H 0.006 0.994 26 H 0.015 0.985 27 H 0.267 0.733 28 H 0.131 0.869 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 10.769 0.819 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.188 4.188 3 C -0.072 4.072 4 O -0.115 6.115 5 C -0.013 4.013 6 C -0.152 4.152 7 C -0.032 4.032 8 C 0.022 3.978 9 C -0.570 4.570 10 H 0.072 0.928 11 C -0.192 4.192 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.191 1.191 17 C -0.160 4.160 18 C -0.084 4.084 19 C -0.163 4.163 20 H 0.095 0.905 21 H 0.087 0.913 22 H 0.110 0.890 23 H 0.266 0.734 24 H 0.135 0.865 25 H 0.024 0.976 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.867 10.820 0.869 17.610 hybrid contribution 0.864 -0.544 -0.651 1.211 sum -13.003 10.276 0.218 16.575 Atomic orbital electron populations 1.20214 0.85956 1.03932 1.03060 1.21554 0.98315 0.89998 1.08960 1.24585 0.78558 1.01321 1.02785 1.83955 1.30219 1.20474 1.76876 1.19690 0.95981 0.81704 1.03878 1.19761 0.96620 0.91096 1.07738 1.20186 0.96440 0.92872 0.93691 1.18119 0.90484 0.92568 0.96666 1.21314 1.15830 1.27659 0.92237 0.92827 1.25911 0.95931 0.95462 1.01877 1.70067 1.21954 1.31627 1.33091 0.85483 0.78030 0.78268 0.79190 1.19550 1.20368 1.19082 1.20856 0.91472 1.00666 1.02996 1.20459 0.99772 0.90271 0.97937 1.20188 0.92636 0.95317 1.08139 0.90484 0.91283 0.88971 0.73440 0.86501 0.97587 0.96663 0.92434 0.85065 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.43 71.23 0.74 -0.48 15 2 C -0.19 -4.80 6.35 -18.59 -0.12 -4.92 15 3 C -0.01 -0.22 11.89 66.85 0.79 0.57 15 4 O -0.21 -7.20 10.58 -8.88 -0.09 -7.29 15 5 C 0.03 1.34 7.42 22.99 0.17 1.51 15 6 C -0.13 -5.88 9.70 22.35 0.22 -5.66 15 7 C -0.03 -1.47 5.07 -19.84 -0.10 -1.57 15 8 C 0.06 3.19 5.08 29.10 0.15 3.33 15 9 C -0.53 -30.85 9.09 25.60 0.23 -30.62 15 10 H 0.05 3.07 7.74 -2.91 -0.02 3.05 15 11 C 0.01 0.39 5.46 84.66 0.46 0.85 15 12 N -0.93 -56.01 13.29 21.45 0.28 -55.73 15 13 Si 0.97 44.58 29.54 68.60 2.03 46.61 15 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 17 C -0.14 -5.65 9.62 22.04 0.21 -5.44 15 18 C -0.07 -2.24 10.05 22.20 0.22 -2.02 15 19 C -0.16 -5.58 6.38 -20.21 -0.13 -5.70 15 20 H 0.08 1.12 8.14 -2.38 -0.02 1.10 15 21 H 0.07 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.09 1.01 8.14 -2.39 -0.02 0.99 15 23 H 0.25 3.06 8.06 -2.91 -0.02 3.04 15 24 H 0.12 5.16 8.06 -2.91 -0.02 5.14 15 25 H 0.01 0.34 8.08 -2.39 -0.02 0.32 15 26 H 0.02 0.86 8.08 -2.39 -0.02 0.84 15 27 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 28 H 0.13 4.94 8.06 -2.91 -0.02 4.92 15 29 H 0.15 3.93 8.06 -2.91 -0.02 3.91 15 Total: -1.00 -68.28 260.14 6.21 -62.07 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.14 Total: 4.47 kcal Atomic # 6 Polarization: -52.99 SS G_CDS: 2.86 Total: -50.14 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.28 Total: -55.73 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.09 Total: -7.29 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.28 6.21 -62.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298647.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.493 kcal (2) G-P(sol) polarization free energy of solvation -68.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds