Wall clock time and date at job start Mon Mar 30 2020 02:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86806 * 119.99748 * 2 1 4 4 H 1.48497 * 109.47080 * 240.00056 * 3 2 1 5 5 H 1.48503 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47192 * 120.00083 * 3 2 1 7 7 C 1.40307 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.43199 * 119.99908 * 359.97438 * 7 2 1 10 10 C 3.52368 * 80.17462 * 180.02562 * 2 1 3 11 11 C 4.93159 * 74.26742 * 180.02562 * 2 1 3 12 12 O 1.42903 * 109.46900 * 197.18337 * 11 10 9 13 13 C 1.42893 * 113.99793 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.47070 * 179.97438 * 13 12 11 15 15 C 1.38238 * 119.99792 * 89.99993 * 14 13 12 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.97930 * 14 13 12 20 20 H 0.97003 * 120.00606 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47157 * 77.18423 * 11 10 9 22 22 H 1.08993 * 109.47228 * 317.18482 * 11 10 9 23 23 H 1.09005 * 109.47744 * 60.00256 * 13 12 11 24 24 H 1.09000 * 109.47353 * 299.99456 * 13 12 11 25 25 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 29 29 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0084 -1.2150 -0.0005 8 1 3.0884 -1.2150 -0.0010 9 6 1.2925 -2.4552 -0.0005 10 6 0.7055 -3.4720 -0.0016 11 6 -0.0304 -4.7468 -0.0021 12 8 0.8462 -5.8030 0.3957 13 6 0.2276 -7.0907 0.4280 14 6 1.2382 -8.1229 0.8574 15 6 1.3952 -8.4204 2.1983 16 6 2.3218 -9.3676 2.5921 17 6 3.0910 -10.0176 1.6452 18 6 2.9378 -9.7163 0.3049 19 6 2.0079 -8.7725 -0.0894 20 1 -0.4851 0.8400 -0.0004 21 1 -0.4092 -4.9472 -1.0044 22 1 -0.8650 -4.6849 0.6961 23 1 -0.1456 -7.3396 -0.5655 24 1 -0.6019 -7.0777 1.1350 25 1 0.7939 -7.9128 2.9381 26 1 2.4448 -9.5997 3.6397 27 1 3.8146 -10.7580 1.9530 28 1 3.5418 -10.2210 -0.4346 29 1 1.8847 -8.5405 -1.1370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261298970.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:50 Heat of formation + Delta-G solvation = 12.284182 kcal Electronic energy + Delta-G solvation = -12585.162785 eV Core-core repulsion = 10246.109564 eV Total energy + Delta-G solvation = -2339.053221 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.25286 -37.10984 -33.53103 -32.12541 -30.86597 -30.77183 -27.32452 -25.59680 -24.11845 -22.53942 -21.22311 -18.35661 -16.87909 -15.97961 -15.66671 -15.62081 -15.10363 -14.53967 -14.39388 -13.41765 -13.37476 -12.68356 -12.58407 -12.13251 -11.68962 -11.51501 -11.21326 -11.00164 -10.93226 -10.75072 -10.26264 -9.72994 -9.16884 -8.88098 -8.79145 -8.25997 -8.02021 -6.59319 -4.43070 1.32317 1.44052 3.09750 3.14733 3.18233 3.65653 4.02621 4.20465 4.35754 4.87261 4.88840 5.01542 5.13969 5.36711 5.39322 5.50775 5.62168 5.64086 5.70407 6.00904 6.07205 6.08071 6.43677 6.48107 6.50887 6.54749 6.69025 7.01820 7.32612 7.81487 8.15942 8.59286 8.96666 9.91140 10.50961 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.053339 B = 0.004337 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.814563 B = 6455.090740 C = 6653.776583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.077 3.923 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.450 4.450 8 H 0.091 0.909 9 C 0.074 3.926 10 C -0.444 4.444 11 C 0.231 3.769 12 O -0.379 6.379 13 C 0.098 3.902 14 C -0.081 4.081 15 C -0.099 4.099 16 C -0.125 4.125 17 C -0.121 4.121 18 C -0.126 4.126 19 C -0.100 4.100 20 H 0.278 0.722 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -15.525 2.008 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.137 4.137 3 Si 0.748 3.252 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.483 4.483 8 H 0.109 0.891 9 C 0.072 3.928 10 C -0.447 4.447 11 C 0.156 3.844 12 O -0.299 6.299 13 C 0.021 3.979 14 C -0.081 4.081 15 C -0.117 4.117 16 C -0.143 4.143 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.118 4.118 20 H 0.088 0.912 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.141 0.859 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.458 -15.339 2.052 15.544 hybrid contribution 0.011 0.777 -0.048 0.778 sum 1.470 -14.563 2.004 14.773 Atomic orbital electron populations 1.69675 1.07476 1.28995 1.39880 1.25839 0.94873 1.00622 0.92343 0.86144 0.79546 0.79762 0.79750 1.19000 1.20441 1.18998 1.18151 0.93023 0.85482 1.51648 0.89149 1.19805 0.90982 0.90692 0.91308 1.20321 1.05201 0.95951 1.23225 1.18308 0.88989 0.80697 0.96378 1.88096 1.38193 1.14158 1.89426 1.21235 0.93281 0.83552 0.99797 1.19743 0.98137 0.96564 0.93680 1.21111 0.98234 0.97023 0.95369 1.21124 0.96640 0.97124 0.99452 1.21142 0.99453 1.00017 0.93316 1.21121 0.98645 0.98472 0.96115 1.21103 0.95219 0.95854 0.99588 0.91205 0.94294 0.94002 0.92828 0.92806 0.85873 0.86090 0.86273 0.86097 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.21 13.26 55.57 0.74 -23.48 15 2 C 0.08 2.14 5.51 -17.26 -0.10 2.04 15 3 Si 0.92 20.13 29.56 -169.99 -5.03 15.11 15 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 7 C -0.45 -13.37 9.59 -36.88 -0.35 -13.72 15 8 H 0.09 2.50 7.85 -52.49 -0.41 2.09 15 9 C 0.07 2.28 13.01 -38.84 -0.51 1.78 15 10 C -0.44 -12.82 13.73 -37.12 -0.51 -13.33 15 11 C 0.23 5.20 6.41 34.37 0.22 5.42 15 12 O -0.38 -8.08 10.28 -35.23 -0.36 -8.44 15 13 C 0.10 1.54 6.06 36.01 0.22 1.75 15 14 C -0.08 -1.20 5.51 -104.62 -0.58 -1.78 15 15 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 15 16 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 15 17 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 15 18 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 15 19 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 15 20 H 0.28 7.28 8.29 -40.82 -0.34 6.94 15 21 H 0.04 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.05 0.74 8.08 -51.93 -0.42 0.32 15 24 H 0.05 0.75 8.09 -51.93 -0.42 0.33 15 25 H 0.12 1.53 8.06 -52.48 -0.42 1.10 15 26 H 0.12 1.12 8.06 -52.49 -0.42 0.69 15 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 15 28 H 0.12 1.11 8.06 -52.49 -0.42 0.68 15 29 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 LS Contribution 272.68 15.07 4.11 4.11 Total: -1.00 -33.27 272.68 -7.45 -40.72 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.35 Total: -1.28 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -3.56 Total: -26.74 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.74 Total: -23.48 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.36 Total: -8.44 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.27 -7.45 -40.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298970.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.005 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds