Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86806 * 119.99748 * 2 1 4 4 H 1.48497 * 109.47080 * 240.00056 * 3 2 1 5 5 H 1.48503 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47192 * 120.00083 * 3 2 1 7 7 C 1.40307 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.43199 * 119.99908 * 359.97438 * 7 2 1 10 10 C 3.52368 * 80.17462 * 180.02562 * 2 1 3 11 11 C 4.93159 * 74.26742 * 180.02562 * 2 1 3 12 12 O 1.42903 * 109.46900 * 197.18337 * 11 10 9 13 13 C 1.42893 * 113.99793 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.47070 * 179.97438 * 13 12 11 15 15 C 1.38238 * 119.99792 * 89.99993 * 14 13 12 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.97930 * 14 13 12 20 20 H 0.97003 * 120.00606 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47157 * 77.18423 * 11 10 9 22 22 H 1.08993 * 109.47228 * 317.18482 * 11 10 9 23 23 H 1.09005 * 109.47744 * 60.00256 * 13 12 11 24 24 H 1.09000 * 109.47353 * 299.99456 * 13 12 11 25 25 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 29 29 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0084 -1.2150 -0.0005 8 1 3.0884 -1.2150 -0.0010 9 6 1.2925 -2.4552 -0.0005 10 6 0.7055 -3.4720 -0.0016 11 6 -0.0304 -4.7468 -0.0021 12 8 0.8462 -5.8030 0.3957 13 6 0.2276 -7.0907 0.4280 14 6 1.2382 -8.1229 0.8574 15 6 1.3952 -8.4204 2.1983 16 6 2.3218 -9.3676 2.5921 17 6 3.0910 -10.0176 1.6452 18 6 2.9378 -9.7163 0.3049 19 6 2.0079 -8.7725 -0.0894 20 1 -0.4851 0.8400 -0.0004 21 1 -0.4092 -4.9472 -1.0044 22 1 -0.8650 -4.6849 0.6961 23 1 -0.1456 -7.3396 -0.5655 24 1 -0.6019 -7.0777 1.1350 25 1 0.7939 -7.9128 2.9381 26 1 2.4448 -9.5997 3.6397 27 1 3.8146 -10.7580 1.9530 28 1 3.5418 -10.2210 -0.4346 29 1 1.8847 -8.5405 -1.1370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261298970.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = -7.739460 kcal Electronic energy + Delta-G solvation = -12586.031076 eV Core-core repulsion = 10246.109564 eV Total energy + Delta-G solvation = -2339.921511 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.27526 -38.59287 -35.67217 -33.62107 -32.49898 -31.79654 -29.20116 -27.06642 -25.95569 -23.47879 -22.24040 -20.46797 -17.98503 -17.59380 -17.29022 -16.98959 -16.69541 -15.88224 -15.62620 -15.02046 -14.28913 -14.00507 -13.80580 -13.64987 -13.54165 -13.14936 -12.98749 -12.65201 -12.02353 -11.95847 -11.89603 -11.66341 -10.83635 -10.40284 -10.20721 -9.82663 -9.75698 -8.69388 -6.67379 0.32964 0.49514 1.37440 1.37962 1.53933 2.09655 2.20082 2.29274 2.85920 3.32656 3.50399 3.91326 3.92695 4.15115 4.23448 4.30538 4.33530 4.46364 4.50989 4.66547 4.70352 4.77826 5.06722 5.15359 5.19504 5.54232 5.59229 5.68395 5.95976 6.09793 6.25109 6.45489 6.78582 7.64878 8.44058 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.053339 B = 0.004337 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.814563 B = 6455.090740 C = 6653.776583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.027 3.973 3 Si 1.013 2.987 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.003 3.997 10 C -0.450 4.450 11 C 0.231 3.769 12 O -0.406 6.406 13 C 0.094 3.906 14 C -0.110 4.110 15 C -0.117 4.117 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.116 4.116 20 H 0.289 0.711 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.126 0.874 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -15.948 2.270 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.183 4.183 3 Si 0.830 3.170 4 H -0.177 1.177 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.524 4.524 8 H 0.115 0.885 9 C 0.001 3.999 10 C -0.452 4.452 11 C 0.157 3.843 12 O -0.327 6.327 13 C 0.018 3.982 14 C -0.110 4.110 15 C -0.135 4.135 16 C -0.148 4.148 17 C -0.137 4.137 18 C -0.147 4.147 19 C -0.134 4.134 20 H 0.099 0.901 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.144 0.856 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.164 0.836 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.282 -15.804 2.314 16.135 hybrid contribution -0.275 0.724 -0.108 0.782 sum 2.007 -15.080 2.206 15.372 Atomic orbital electron populations 1.69756 1.09546 1.30992 1.39868 1.27099 0.95885 1.04752 0.90542 0.84835 0.78133 0.73505 0.80488 1.17673 1.18826 1.17798 1.18668 0.93770 0.86429 1.53505 0.88486 1.20785 0.93289 0.92477 0.93308 1.21788 1.04239 0.97255 1.21951 1.18427 0.88602 0.79035 0.98276 1.88020 1.39068 1.15940 1.89627 1.21511 0.94061 0.81191 1.01420 1.19836 0.99254 0.97277 0.94679 1.21321 0.99169 0.97958 0.95085 1.21476 0.95865 0.96341 1.01068 1.21577 0.99294 0.99907 0.92917 1.21482 0.98143 0.97841 0.97253 1.21320 0.95777 0.96583 0.99757 0.90110 0.91966 0.92178 0.91064 0.91241 0.85623 0.83629 0.83141 0.83558 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.56 13.26 21.89 0.29 -51.27 15 2 C 0.03 1.52 5.51 85.37 0.47 1.99 15 3 Si 1.01 40.91 29.56 68.60 2.03 42.94 15 4 H -0.25 -9.66 7.11 99.48 0.71 -8.95 15 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 15 7 C -0.49 -30.15 9.59 24.02 0.23 -29.92 15 8 H 0.10 5.54 7.85 -2.91 -0.02 5.52 15 9 C 0.00 0.18 13.01 30.01 0.39 0.57 15 10 C -0.45 -26.76 13.73 31.12 0.43 -26.33 15 11 C 0.23 10.47 6.41 70.18 0.45 10.92 15 12 O -0.41 -17.41 10.28 -148.98 -1.53 -18.95 15 13 C 0.09 2.90 6.06 71.24 0.43 3.33 15 14 C -0.11 -3.22 5.51 -19.86 -0.11 -3.33 15 15 C -0.12 -3.09 9.70 22.27 0.22 -2.88 15 16 C -0.13 -2.78 10.05 22.27 0.22 -2.56 15 17 C -0.12 -2.32 10.05 22.27 0.22 -2.10 15 18 C -0.13 -2.75 10.05 22.27 0.22 -2.53 15 19 C -0.12 -3.03 9.70 22.27 0.22 -2.82 15 20 H 0.29 15.18 8.29 -92.71 -0.77 14.41 15 21 H 0.06 2.50 8.14 -2.38 -0.02 2.48 15 22 H 0.06 2.47 8.14 -2.39 -0.02 2.46 15 23 H 0.07 1.90 8.08 -2.38 -0.02 1.88 15 24 H 0.07 1.88 8.09 -2.39 -0.02 1.86 15 25 H 0.13 3.09 8.06 -2.91 -0.02 3.07 15 26 H 0.15 2.31 8.06 -2.91 -0.02 2.28 15 27 H 0.15 1.94 8.06 -2.91 -0.02 1.92 15 28 H 0.15 2.27 8.06 -2.91 -0.02 2.25 15 29 H 0.13 3.05 8.06 -2.91 -0.02 3.03 15 Total: -1.00 -74.29 272.68 5.31 -68.98 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.13 Total: 13.95 kcal Atomic # 6 Polarization: -59.05 SS G_CDS: 3.39 Total: -55.65 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.29 Total: -51.27 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.53 Total: -18.95 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -74.29 5.31 -68.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298970.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.239 kcal (2) G-P(sol) polarization free energy of solvation -74.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds