Wall clock time and date at job start Mon Mar 30 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.33550 * 55.00313 * 10 9 7 12 12 C 1.49714 * 109.33932 * 295.32111 * 10 9 7 13 13 C 1.52290 * 104.75155 * 140.26480 * 12 10 9 14 14 S 1.74435 * 114.80447 * 92.46703 * 13 12 10 15 15 C 1.84955 * 101.83489 * 297.89182 * 14 13 12 16 16 C 1.50374 * 109.16381 * 68.01082 * 15 14 13 17 17 C 1.53208 * 109.33922 * 174.67771 * 10 9 7 18 18 H 1.08997 * 107.96216 * 284.34891 * 17 10 9 19 19 O 1.42904 * 107.95551 * 40.59239 * 17 10 9 20 20 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 22 22 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 23 23 H 1.09002 * 110.37484 * 259.06685 * 12 10 9 24 24 H 1.09003 * 110.37766 * 21.45582 * 12 10 9 25 25 H 1.09005 * 108.41733 * 213.84830 * 13 12 10 26 26 H 1.09001 * 108.41714 * 331.08418 * 13 12 10 27 27 H 1.08996 * 109.52406 * 187.91914 * 15 14 13 28 28 H 1.08996 * 109.52061 * 308.04650 * 15 14 13 29 29 H 1.09000 * 108.03467 * 30.93102 * 16 15 14 30 30 H 1.09004 * 108.03593 * 147.37185 * 16 15 14 31 31 H 0.96696 * 113.99733 * 179.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9283 -3.5530 0.8420 12 6 3.0268 -3.6463 -1.2775 13 6 4.4485 -4.0056 -0.8666 14 16 4.8271 -5.7063 -0.9517 15 6 3.6395 -6.4210 0.2729 16 6 2.2390 -6.2763 -0.2552 17 6 1.4811 -4.9831 0.1336 18 1 1.1622 -5.0831 1.1710 19 8 0.3072 -4.8971 -0.6769 20 1 -0.4850 -0.8401 0.0004 21 1 0.6247 -2.5570 0.8897 22 1 0.6242 -2.5567 -0.8903 23 1 2.6336 -4.3884 -1.9722 24 1 3.0009 -2.6531 -1.7260 25 1 5.1407 -3.4660 -1.5130 26 1 4.6065 -3.6685 0.1579 27 1 3.8643 -7.4767 0.4249 28 1 3.7293 -5.8894 1.2203 29 1 2.2819 -6.3253 -1.3432 30 1 1.6565 -7.1284 0.0952 31 1 -0.2437 -5.6915 -0.6566 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261302678.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:06 Heat of formation + Delta-G solvation = -94.527766 kcal Electronic energy + Delta-G solvation = -13292.363707 eV Core-core repulsion = 11084.122724 eV Total energy + Delta-G solvation = -2208.240983 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98448 -36.52581 -35.10011 -33.55777 -31.16742 -27.94022 -25.63180 -24.45933 -23.31289 -20.54040 -19.05419 -18.26446 -17.65310 -16.24856 -15.95025 -15.64037 -15.39837 -14.83408 -14.67787 -14.43961 -13.82243 -13.71246 -13.35474 -13.16136 -12.83393 -12.53130 -11.98428 -11.94449 -11.72873 -11.53325 -11.45941 -10.71800 -10.64449 -10.55053 -10.52137 -8.66471 -8.64601 -6.35308 0.87325 1.49539 1.56071 1.59639 1.74959 2.55545 3.18158 3.33342 3.60867 3.76021 3.81497 4.00950 4.10782 4.35951 4.42775 4.53252 4.67812 4.70733 4.80168 4.91330 5.02990 5.10968 5.24956 5.29892 5.43529 5.67719 6.02650 6.22534 6.60410 6.95862 7.46784 8.73894 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.038187 B = 0.009203 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.057297 B = 3041.886252 C = 3611.640740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.120 2.880 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.606 4.606 8 H 0.053 0.947 9 C 0.035 3.965 10 C -0.067 4.067 11 H 0.065 0.935 12 C -0.092 4.092 13 C -0.109 4.109 14 S -0.252 6.252 15 C -0.060 4.060 16 C -0.144 4.144 17 C 0.110 3.890 18 H 0.039 0.961 19 O -0.579 6.579 20 H 0.254 0.746 21 H -0.028 1.028 22 H -0.010 1.010 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.348 -13.901 0.426 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.241 4.241 3 Si 0.941 3.059 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.644 4.644 8 H 0.071 0.929 9 C -0.003 4.003 10 C -0.085 4.085 11 H 0.083 0.917 12 C -0.132 4.132 13 C -0.258 4.258 14 S -0.026 6.026 15 C -0.207 4.207 16 C -0.183 4.183 17 C 0.051 3.949 18 H 0.057 0.943 19 O -0.386 6.386 20 H 0.063 0.937 21 H -0.009 1.009 22 H 0.008 0.992 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.153 0.847 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.198 -12.191 -0.320 14.695 hybrid contribution -1.388 -1.198 0.886 2.037 sum 6.809 -13.390 0.565 15.032 Atomic orbital electron populations 1.70841 1.08066 1.29775 1.49298 1.27404 0.96636 1.06897 0.93141 0.82912 0.74380 0.71157 0.77430 1.19216 1.20502 1.20639 1.22515 0.94555 0.93205 1.54102 0.92893 1.18942 0.94252 0.93465 0.93591 1.20790 0.96872 0.93338 0.97545 0.91706 1.21059 0.93063 1.01654 0.97388 1.22598 1.00781 0.97172 1.05271 1.85945 1.52946 1.04939 1.58775 1.23322 0.93975 1.05120 0.98331 1.22265 0.95817 0.97295 1.02911 1.22369 0.85782 0.93880 0.92866 0.94295 1.86739 1.36863 1.43949 1.71085 0.93693 1.00935 0.99181 0.90903 0.92267 0.88361 0.90598 0.84659 0.89585 0.90743 0.87889 0.76665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.64 13.65 21.45 0.29 -60.34 16 2 C -0.04 -2.62 5.46 84.65 0.46 -2.16 16 3 Si 1.12 51.76 29.90 68.60 2.05 53.81 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.61 -35.09 7.98 25.60 0.20 -34.88 16 8 H 0.05 2.96 7.50 -2.91 -0.02 2.94 16 9 C 0.03 1.87 3.10 29.85 0.09 1.96 16 10 C -0.07 -2.74 1.77 -11.78 -0.02 -2.76 16 11 H 0.06 2.64 6.70 -2.38 -0.02 2.62 16 12 C -0.09 -3.54 5.03 29.31 0.15 -3.39 16 13 C -0.11 -3.50 5.44 71.75 0.39 -3.11 16 14 S -0.25 -6.71 21.72 -56.49 -1.23 -7.94 16 15 C -0.06 -1.26 6.23 71.13 0.44 -0.81 16 16 C -0.14 -3.26 4.53 30.38 0.14 -3.12 16 17 C 0.11 3.55 2.95 31.30 0.09 3.64 16 18 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 19 O -0.58 -20.17 11.83 -148.98 -1.76 -21.93 16 20 H 0.25 16.76 7.22 -92.71 -0.67 16.09 16 21 H -0.03 -1.63 8.01 -2.38 -0.02 -1.65 16 22 H -0.01 -0.61 7.34 -2.39 -0.02 -0.63 16 23 H 0.07 2.70 6.50 -2.39 -0.02 2.69 16 24 H 0.06 2.66 6.74 -2.39 -0.02 2.65 16 25 H 0.10 3.04 8.14 -4.59 -0.04 3.00 16 26 H 0.08 2.49 6.79 -4.59 -0.03 2.46 16 27 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.09 1.84 8.05 -2.39 -0.02 1.82 16 29 H 0.07 1.86 6.83 -2.39 -0.02 1.84 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.38 8.87 8.97 -74.06 -0.66 8.21 16 Total: -1.00 -70.24 254.14 1.82 -68.42 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.52 Total: 12.63 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 1.95 Total: -44.64 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.29 Total: -60.34 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.76 Total: -21.93 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -1.23 Total: -7.94 kcal Total: -70.24 1.82 -68.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261302678.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.107 kcal (2) G-P(sol) polarization free energy of solvation -70.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds