Wall clock time and date at job start Mon Mar 30 2020 02:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00118 * 2 1 4 4 H 1.48506 * 109.46789 * 269.99812 * 3 2 1 5 5 H 1.48497 * 109.47090 * 29.99649 * 3 2 1 6 6 H 1.48497 * 109.47050 * 149.99813 * 3 2 1 7 7 C 1.37874 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00450 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47158 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.96974 * 56.27213 * 10 9 7 12 12 C 1.53182 * 109.98523 * 295.00030 * 10 9 7 13 13 C 1.45389 * 115.33637 * 148.88397 * 12 10 9 14 14 S 1.83631 * 109.65381 * 64.75484 * 13 12 10 15 15 C 1.79992 * 102.84282 * 291.01188 * 14 13 12 16 16 C 1.53781 * 113.08871 * 86.75443 * 15 14 13 17 17 C 1.51585 * 110.06606 * 177.59826 * 10 9 7 18 18 H 1.08995 * 109.48191 * 102.08052 * 17 10 9 19 19 O 1.42900 * 109.47927 * 342.05083 * 17 10 9 20 20 H 0.97004 * 119.99915 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.46946 * 60.00242 * 9 7 2 22 22 H 1.09002 * 109.47333 * 299.99914 * 9 7 2 23 23 H 1.09006 * 108.31169 * 27.36941 * 12 10 9 24 24 H 1.08997 * 108.30930 * 270.40812 * 12 10 9 25 25 H 1.09002 * 109.43585 * 184.80049 * 13 12 10 26 26 H 1.08996 * 109.43750 * 304.71123 * 13 12 10 27 27 H 1.08997 * 108.77535 * 325.82094 * 15 14 13 28 28 H 1.09007 * 108.67385 * 207.61493 * 15 14 13 29 29 H 1.08996 * 108.27598 * 194.39745 * 16 15 14 30 30 H 1.09006 * 108.27510 * 77.52682 * 16 15 14 31 31 H 0.96699 * 114.00159 * 179.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 1 2.9187 -3.5751 0.8543 12 6 3.0488 -3.6653 -1.3022 13 6 4.4060 -4.1756 -1.1954 14 16 4.3630 -5.9553 -0.7450 15 6 3.7505 -5.9250 0.9472 16 6 2.2151 -5.9240 1.0330 17 6 1.5017 -4.9818 0.0615 18 1 1.4795 -5.4317 -0.9310 19 8 0.1647 -4.7556 0.5124 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8898 22 1 0.6239 -2.5567 0.8903 23 1 3.0960 -2.6431 -1.6780 24 1 2.5122 -4.2697 -2.0336 25 1 4.9149 -4.0558 -2.1519 26 1 4.9430 -3.6199 -0.4268 27 1 4.1297 -5.0307 1.4416 28 1 4.1302 -6.8021 1.4716 29 1 1.9297 -5.6484 2.0481 30 1 1.8617 -6.9383 0.8470 31 1 -0.3706 -5.5585 0.5744 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261302679.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:08 Heat of formation + Delta-G solvation = -68.902876 kcal Electronic energy + Delta-G solvation = -13258.994499 eV Core-core repulsion = 11051.864694 eV Total energy + Delta-G solvation = -2207.129805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.36965 -34.85841 -32.90503 -32.18821 -29.70831 -26.61293 -24.27555 -22.17137 -21.42012 -19.16213 -17.10607 -16.30433 -15.50949 -14.98320 -14.69625 -14.32702 -13.91358 -13.68232 -13.07600 -12.61994 -12.14794 -11.80264 -11.65158 -11.16636 -11.03079 -10.81310 -10.75160 -10.51180 -10.13356 -9.84783 -9.50487 -9.25933 -9.04051 -8.88099 -8.27179 -7.48844 -5.92968 -3.95205 1.97706 2.76039 3.32963 3.39769 3.41959 4.48691 4.70710 4.90327 5.07151 5.26454 5.34315 5.41665 5.51329 5.68631 5.81648 5.86352 5.93437 6.05132 6.21427 6.49583 6.55583 6.71251 6.98629 7.18223 7.81232 8.01074 8.16054 8.20959 8.51777 9.14175 9.67337 11.17751 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.037155 B = 0.009302 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.422028 B = 3009.525959 C = 3511.906563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.045 3.955 10 C -0.075 4.075 11 H 0.061 0.939 12 C -0.129 4.129 13 C -0.052 4.052 14 S -0.297 6.297 15 C -0.074 4.074 16 C -0.146 4.146 17 C 0.108 3.892 18 H 0.057 0.943 19 O -0.545 6.545 20 H 0.259 0.741 21 H 0.017 0.983 22 H 0.029 0.971 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -11.102 0.028 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.071 0.929 9 C 0.008 3.992 10 C -0.094 4.094 11 H 0.079 0.921 12 C -0.167 4.167 13 C -0.199 4.199 14 S -0.070 6.070 15 C -0.222 4.222 16 C -0.186 4.186 17 C 0.049 3.951 18 H 0.075 0.925 19 O -0.348 6.348 20 H 0.069 0.931 21 H 0.035 0.965 22 H 0.047 0.953 23 H 0.112 0.888 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.336 -11.245 -0.567 12.919 hybrid contribution -0.010 1.310 0.789 1.529 sum 6.326 -9.935 0.222 11.780 Atomic orbital electron populations 1.69990 1.05958 1.26302 1.50780 1.25006 0.94769 0.98978 0.95616 0.86699 0.79876 0.84018 0.78011 1.20764 1.21295 1.20021 1.21307 0.92763 0.91342 1.50447 0.92948 1.18840 0.93006 0.89183 0.98195 1.21167 0.97524 0.94900 0.95763 0.92087 1.20633 0.93371 1.03436 0.99303 1.22391 1.01618 0.91271 1.04620 1.86560 1.85865 1.15531 1.19085 1.23112 0.98228 1.05561 0.95299 1.22533 0.93908 1.00457 1.01725 1.21929 0.82335 0.95931 0.94884 0.92517 1.86903 1.23082 1.34823 1.89961 0.93147 0.96510 0.95267 0.88815 0.92083 0.88277 0.90039 0.89697 0.88647 0.90906 0.92477 0.79710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.53 8.02 -34.44 -0.28 -14.80 16 8 H 0.05 1.40 7.45 -52.49 -0.39 1.01 16 9 C 0.04 1.17 3.64 -27.88 -0.10 1.07 16 10 C -0.07 -1.52 1.82 -91.24 -0.17 -1.69 16 11 H 0.06 1.25 6.24 -51.93 -0.32 0.92 16 12 C -0.13 -2.33 4.40 -30.22 -0.13 -2.46 16 13 C -0.05 -0.78 6.07 33.58 0.20 -0.58 16 14 S -0.30 -4.33 21.56 -107.50 -2.32 -6.65 16 15 C -0.07 -0.99 5.59 37.56 0.21 -0.78 16 16 C -0.15 -2.07 5.27 -26.33 -0.14 -2.21 16 17 C 0.11 1.88 3.01 -27.46 -0.08 1.80 16 18 H 0.06 0.97 6.84 -51.93 -0.36 0.62 16 19 O -0.54 -10.12 11.36 -35.23 -0.40 -10.52 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.03 0.85 7.33 -51.93 -0.38 0.47 16 23 H 0.09 1.89 6.64 -51.93 -0.34 1.55 16 24 H 0.06 1.08 6.99 -51.93 -0.36 0.71 16 25 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.19 7.07 -51.71 -0.37 0.82 16 28 H 0.10 1.10 8.14 -51.68 -0.42 0.68 16 29 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.36 4.71 9.08 45.56 0.41 5.12 16 LS Contribution 255.12 15.07 3.84 3.84 Total: -1.00 -31.15 255.12 -7.52 -38.67 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -3.78 Total: 2.52 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.58 Total: -18.10 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.40 Total: -10.52 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.32 Total: -6.65 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.15 -7.52 -38.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261302679.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.233 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds