Wall clock time and date at job start Mon Mar 30 2020 02:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00330 * 2 1 4 4 H 1.48501 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47160 * 299.99723 * 3 2 1 6 6 H 1.48502 * 109.47281 * 59.99701 * 3 2 1 7 7 C 1.37881 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99885 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.52937 * 109.35058 * 59.82059 * 9 7 2 11 11 C 1.53188 * 109.44977 * 183.04945 * 10 9 7 12 12 C 1.53146 * 108.88206 * 303.43640 * 11 10 9 13 13 C 1.52853 * 117.67876 * 268.50137 * 12 11 10 14 14 C 1.52813 * 117.74701 * 199.62301 * 12 11 10 15 15 F 1.39902 * 117.49963 * 215.11358 * 14 12 11 16 16 F 1.39897 * 117.50193 * 0.14553 * 14 12 11 17 17 C 1.53152 * 115.01006 * 53.93818 * 12 11 10 18 18 C 1.52944 * 109.41278 * 180.14580 * 9 7 2 19 19 H 0.97004 * 119.99897 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.41390 * 300.00134 * 9 7 2 21 21 H 1.09003 * 109.47648 * 303.04419 * 10 9 7 22 22 H 1.09000 * 109.47336 * 63.06012 * 10 9 7 23 23 H 1.09002 * 109.56814 * 183.61756 * 11 10 9 24 24 H 1.08999 * 109.56650 * 63.26150 * 11 10 9 25 25 H 1.09001 * 117.50138 * 359.73373 * 13 12 11 26 26 H 1.08997 * 117.50141 * 144.75149 * 13 12 11 27 27 H 1.09000 * 109.57041 * 186.23623 * 17 12 11 28 28 H 1.09007 * 109.66563 * 65.93896 * 17 12 11 29 29 H 1.09004 * 109.47122 * 296.98042 * 18 9 7 30 30 H 1.09006 * 109.47214 * 56.98505 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 0.3688 -2.5762 -1.2453 11 6 -0.4552 -3.8670 -1.2084 12 6 0.4976 -5.0599 -1.0877 13 6 0.9798 -5.7171 -2.3808 14 6 -0.0322 -6.4367 -1.4863 15 9 0.4215 -7.5399 -0.7553 16 9 -1.3538 -6.5143 -1.9385 17 6 1.4824 -4.9863 0.0829 18 6 2.2459 -3.6607 0.0058 19 1 -0.4850 0.8401 -0.0004 20 1 0.6249 -2.5553 0.8923 21 1 -0.3020 -1.7174 -1.2695 22 1 0.9974 -2.5717 -2.1358 23 1 -1.0365 -3.9554 -2.1262 24 1 -1.1262 -3.8473 -0.3496 25 1 0.6157 -5.3040 -3.3215 26 1 1.9991 -6.1027 -2.3998 27 1 2.1855 -5.8169 0.0213 28 1 0.9367 -5.0390 1.0251 29 1 2.8381 -3.6351 -0.9091 30 1 2.9060 -3.5707 0.8686 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261306231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:04 Heat of formation + Delta-G solvation = -95.209963 kcal Electronic energy + Delta-G solvation = -14944.764965 eV Core-core repulsion = 12182.654013 eV Total energy + Delta-G solvation = -2762.110952 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.35567 -47.03341 -38.39929 -34.46125 -31.82125 -30.00120 -27.52680 -24.00730 -22.27844 -21.88884 -20.18559 -18.14138 -17.25312 -16.47575 -16.14883 -15.61505 -14.56807 -13.86697 -13.67575 -13.52952 -13.29189 -13.11592 -12.69529 -12.53524 -12.19013 -11.58692 -11.51782 -11.20285 -10.94798 -10.58926 -10.32938 -10.14071 -9.80610 -9.44026 -9.40962 -8.94058 -8.65402 -8.30418 -5.99327 -4.05784 3.28554 3.34204 3.37102 3.40586 3.48570 4.43047 4.60931 4.63065 4.94083 5.30310 5.36091 5.69770 5.72749 5.94842 6.04003 6.19321 6.23497 6.31406 6.47953 6.61407 6.67585 6.83071 7.07132 7.20339 7.46359 7.73450 7.99214 8.12993 8.45280 8.98647 9.59159 11.05960 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.061387 B = 0.007676 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.016568 B = 3647.069746 C = 3876.405121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.046 3.954 10 C -0.106 4.106 11 C -0.085 4.085 12 C -0.091 4.091 13 C -0.171 4.171 14 C 0.175 3.825 15 F -0.169 7.169 16 F -0.167 7.167 17 C -0.084 4.084 18 C -0.104 4.104 19 H 0.259 0.741 20 H 0.026 0.974 21 H 0.098 0.902 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 -9.281 -3.216 9.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.144 4.144 11 C -0.123 4.123 12 C -0.092 4.092 13 C -0.208 4.208 14 C 0.139 3.861 15 F -0.149 7.149 16 F -0.147 7.147 17 C -0.122 4.122 18 C -0.141 4.141 19 H 0.069 0.931 20 H 0.045 0.955 21 H 0.117 0.883 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.575 -9.193 -3.203 9.752 hybrid contribution 0.252 0.580 -0.074 0.637 sum 0.826 -8.613 -3.277 9.252 Atomic orbital electron populations 1.69868 1.05836 1.26246 1.51003 1.24972 0.94848 0.99034 0.95220 0.86586 0.80167 0.83999 0.77540 1.19852 1.21095 1.21097 1.21266 0.92940 0.90673 1.50107 0.92693 1.18659 0.92680 0.91579 0.94344 1.21636 0.99025 0.94764 0.98929 1.21358 0.96240 0.93593 1.01071 1.23075 0.99033 0.90522 0.96602 1.24397 0.98910 1.00300 0.97243 1.20508 0.78923 0.85818 1.00898 1.92960 1.88145 1.55690 1.78111 1.92968 1.35781 1.96746 1.89212 1.21254 0.96120 0.99456 0.95328 1.21613 0.98561 0.93452 1.00506 0.93088 0.95541 0.88339 0.94602 0.92861 0.91492 0.86518 0.86648 0.92576 0.91296 0.93146 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 11.28 55.43 0.63 -24.19 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.09 2.02 -91.83 -0.19 0.90 16 10 C -0.11 -2.37 5.02 -26.67 -0.13 -2.50 16 11 C -0.09 -1.61 5.38 -26.56 -0.14 -1.75 16 12 C -0.09 -1.54 1.97 -154.53 -0.31 -1.85 16 13 C -0.17 -2.44 9.90 -26.79 -0.27 -2.71 16 14 C 0.17 2.81 5.15 -26.81 -0.14 2.67 16 15 F -0.17 -2.74 17.03 2.25 0.04 -2.70 16 16 F -0.17 -2.80 17.03 2.25 0.04 -2.76 16 17 C -0.08 -1.44 5.38 -26.57 -0.14 -1.59 16 18 C -0.10 -2.05 5.14 -26.67 -0.14 -2.19 16 19 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 20 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.10 2.51 5.97 -51.93 -0.31 2.20 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.93 7.93 -51.93 -0.41 0.52 16 24 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 25 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 26 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 27 H 0.06 0.86 7.93 -51.93 -0.41 0.44 16 28 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 253.02 15.07 3.81 3.81 Total: -1.00 -27.12 253.02 -6.40 -33.52 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.06 Total: -2.15 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -1.84 Total: -21.41 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.63 Total: -24.19 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.08 Total: -5.46 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.12 -6.40 -33.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261306231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.685 kcal (2) G-P(sol) polarization free energy of solvation -27.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds