Wall clock time and date at job start Mon Mar 30 2020 02:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35829 * 117.00187 * 2 1 4 4 C 1.38538 * 120.08360 * 0.02562 * 3 2 1 5 5 C 1.38166 * 120.22580 * 179.97438 * 4 3 2 6 6 C 1.38491 * 120.14710 * 0.02966 * 5 4 3 7 7 C 1.37731 * 120.12355 * 359.97438 * 6 5 4 8 8 C 1.39300 * 120.41100 * 359.73180 * 7 6 5 9 9 C 1.48107 * 109.13614 * 180.34682 * 8 7 6 10 10 C 1.40953 * 124.85973 * 180.22829 * 9 8 7 11 11 H 1.07999 * 119.99814 * 359.97438 * 10 9 8 12 12 C 1.40000 * 120.00245 * 179.97438 * 10 9 8 13 13 N 1.30806 * 119.99556 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00106 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47162 * 89.99946 * 14 12 10 16 16 H 1.48502 * 109.47195 * 210.00105 * 14 12 10 17 17 H 1.48501 * 109.47067 * 329.99846 * 14 12 10 18 18 C 1.35934 * 110.28346 * 0.22553 * 9 8 7 19 19 C 1.50927 * 132.60394 * 179.97438 * 7 6 5 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99556 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99677 * 1 2 3 23 23 H 1.08001 * 119.88891 * 359.97438 * 4 3 2 24 24 H 1.07994 * 119.92731 * 180.02562 * 5 4 3 25 25 H 1.08001 * 119.93313 * 179.97438 * 6 5 4 26 26 H 0.97000 * 119.99701 * 180.02562 * 13 12 10 27 27 H 1.08003 * 126.12625 * 180.02562 * 18 9 8 28 28 H 1.08991 * 110.17760 * 299.10266 * 19 7 6 29 29 H 1.09004 * 110.17252 * 60.91363 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2929 2.3732 0.0005 5 6 1.9172 3.6058 0.0011 6 6 3.2998 3.6852 0.0005 7 6 4.0582 2.5355 -0.0002 8 6 3.4437 1.2854 0.0055 9 6 4.4852 0.2325 0.0118 10 6 4.2295 -1.1537 0.0139 11 1 3.2117 -1.5150 0.0112 12 6 5.2947 -2.0621 0.0195 13 7 6.5274 -1.6244 0.0224 14 14 4.9558 -3.8990 0.0216 15 1 4.8712 -4.3883 -1.3780 16 1 6.0557 -4.6045 0.7270 17 1 3.6710 -4.1645 0.7173 18 6 5.7231 0.7941 0.0154 19 6 5.5481 2.2944 -0.0014 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8901 23 1 0.2144 2.3162 0.0005 24 1 1.3256 4.5093 0.0019 25 1 3.7842 4.6506 0.0005 26 1 7.2655 -2.2538 0.0259 27 1 6.6634 0.2628 0.0198 28 1 5.9979 2.7255 -0.8956 29 1 5.9994 2.7254 0.8924 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261309494.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:37 Heat of formation + Delta-G solvation = 2.356568 kcal Electronic energy + Delta-G solvation = -13991.014253 eV Core-core repulsion = 11651.530538 eV Total energy + Delta-G solvation = -2339.483715 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.61971 -37.42535 -34.84577 -32.71683 -29.89803 -28.08331 -27.28230 -26.28959 -23.83635 -21.17947 -20.08312 -18.77294 -17.25867 -15.98872 -15.12123 -15.09287 -14.97667 -14.29856 -13.47925 -13.33396 -13.18345 -12.48515 -11.63843 -11.58522 -11.44324 -11.16393 -11.11654 -10.64894 -10.37801 -10.31459 -10.14082 -9.73530 -9.49687 -9.22923 -8.31154 -7.69419 -6.57399 -6.25833 -4.10787 1.99221 2.17826 3.13625 3.22353 3.27962 3.98893 4.01206 4.17603 4.70826 5.33862 5.41739 5.50883 5.51966 5.72609 5.73850 5.80771 5.95267 6.33935 6.43294 6.44470 6.83506 6.85772 6.99822 7.06757 7.21233 7.37863 7.60452 7.77176 8.16275 8.29037 8.61476 9.16390 9.28577 9.37303 10.57683 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.011610 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.337748 B = 2411.096771 C = 3334.931585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.128 3.872 4 C -0.222 4.222 5 C -0.110 4.110 6 C -0.147 4.147 7 C -0.077 4.077 8 C -0.061 4.061 9 C 0.051 3.949 10 C -0.419 4.419 11 H 0.077 0.923 12 C 0.053 3.947 13 N -0.811 5.811 14 Si 0.913 3.087 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.331 4.331 19 C -0.040 4.040 20 H 0.092 0.908 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.117 0.883 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.270 0.730 27 H 0.171 0.829 28 H 0.063 0.937 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 4.487 -0.032 8.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.211 6.211 3 C 0.083 3.917 4 C -0.241 4.241 5 C -0.128 4.128 6 C -0.165 4.165 7 C -0.078 4.078 8 C -0.061 4.061 9 C 0.049 3.951 10 C -0.450 4.450 11 H 0.095 0.905 12 C -0.158 4.158 13 N -0.440 5.440 14 Si 0.739 3.261 15 H -0.200 1.200 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.355 4.355 19 C -0.076 4.076 20 H 0.110 0.890 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.135 0.865 24 H 0.131 0.869 25 H 0.129 0.871 26 H 0.081 0.919 27 H 0.188 0.812 28 H 0.081 0.919 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.083 4.169 -0.026 8.219 hybrid contribution -0.597 -0.575 -0.012 0.829 sum -7.679 3.594 -0.038 8.479 Atomic orbital electron populations 1.22942 0.80603 1.03020 1.00345 1.86276 1.19299 1.26963 1.88515 1.19002 0.91238 0.83750 0.97679 1.20876 0.98887 0.92472 1.11871 1.20585 0.94124 0.96213 1.01920 1.20189 0.93174 0.96990 1.06134 1.20705 0.97515 0.92070 0.97462 1.19896 0.89699 0.96340 1.00209 1.17756 0.89400 0.90838 0.97124 1.19305 0.93797 0.90324 1.41607 0.90493 1.25734 0.94597 1.00814 0.94669 1.69575 0.99312 1.35202 1.39944 0.86236 0.78676 0.82515 0.78710 1.19980 1.20652 1.19033 1.24467 0.99794 0.89141 1.22070 1.19783 0.89067 0.99669 0.99111 0.88991 0.93500 0.93494 0.86535 0.86862 0.87127 0.91916 0.81242 0.91938 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 15 2 O -0.30 -6.44 8.81 -19.20 -0.17 -6.61 15 3 C 0.13 2.88 6.72 -38.81 -0.26 2.62 15 4 C -0.22 -4.14 9.02 -39.50 -0.36 -4.49 15 5 C -0.11 -1.93 10.05 -39.51 -0.40 -2.33 15 6 C -0.15 -2.80 10.03 -39.67 -0.40 -3.20 15 7 C -0.08 -1.76 6.33 -104.30 -0.66 -2.42 15 8 C -0.06 -1.54 6.15 -104.79 -0.64 -2.19 15 9 C 0.05 1.43 5.92 -105.65 -0.63 0.81 15 10 C -0.42 -12.03 9.13 -37.89 -0.35 -12.37 15 11 H 0.08 2.17 6.40 -52.49 -0.34 1.84 15 12 C 0.05 1.44 5.49 -17.33 -0.10 1.35 15 13 N -0.81 -22.32 10.11 55.55 0.56 -21.76 15 14 Si 0.91 20.46 29.56 -169.99 -5.02 15.43 15 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 18 C -0.33 -9.04 10.07 -34.96 -0.35 -9.39 15 19 C -0.04 -0.92 6.73 -28.75 -0.19 -1.11 15 20 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.05 0.62 7.66 -51.93 -0.40 0.22 15 22 H 0.05 0.62 7.66 -51.93 -0.40 0.23 15 23 H 0.12 1.78 6.28 -52.49 -0.33 1.45 15 24 H 0.11 1.58 8.06 -52.49 -0.42 1.15 15 25 H 0.11 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.27 6.80 8.30 -40.82 -0.34 6.46 15 27 H 0.17 4.86 5.41 -52.48 -0.28 4.58 15 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 15 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 247.50 15.07 3.73 3.73 Total: -1.00 -30.36 247.50 -7.23 -37.59 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -2.99 Total: 2.96 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -3.34 Total: -31.35 kcal Atomic # 7 Polarization: -22.32 SS G_CDS: 0.56 Total: -21.76 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.17 Total: -6.61 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.36 -7.23 -37.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261309494.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.950 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds