Wall clock time and date at job start Mon Mar 30 2020 02:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35829 * 117.00187 * 2 1 4 4 C 1.38538 * 120.08360 * 0.02562 * 3 2 1 5 5 C 1.38166 * 120.22580 * 179.97438 * 4 3 2 6 6 C 1.38491 * 120.14710 * 0.02966 * 5 4 3 7 7 C 1.37731 * 120.12355 * 359.97438 * 6 5 4 8 8 C 1.39300 * 120.41100 * 359.73180 * 7 6 5 9 9 C 1.48107 * 109.13614 * 180.34682 * 8 7 6 10 10 C 1.40953 * 124.85973 * 180.22829 * 9 8 7 11 11 H 1.07999 * 119.99814 * 359.97438 * 10 9 8 12 12 C 1.40000 * 120.00245 * 179.97438 * 10 9 8 13 13 N 1.30806 * 119.99556 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00106 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47162 * 89.99946 * 14 12 10 16 16 H 1.48502 * 109.47195 * 210.00105 * 14 12 10 17 17 H 1.48501 * 109.47067 * 329.99846 * 14 12 10 18 18 C 1.35934 * 110.28346 * 0.22553 * 9 8 7 19 19 C 1.50927 * 132.60394 * 179.97438 * 7 6 5 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99556 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99677 * 1 2 3 23 23 H 1.08001 * 119.88891 * 359.97438 * 4 3 2 24 24 H 1.07994 * 119.92731 * 180.02562 * 5 4 3 25 25 H 1.08001 * 119.93313 * 179.97438 * 6 5 4 26 26 H 0.97000 * 119.99701 * 180.02562 * 13 12 10 27 27 H 1.08003 * 126.12625 * 180.02562 * 18 9 8 28 28 H 1.08991 * 110.17760 * 299.10266 * 19 7 6 29 29 H 1.09004 * 110.17252 * 60.91363 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2929 2.3732 0.0005 5 6 1.9172 3.6058 0.0011 6 6 3.2998 3.6852 0.0005 7 6 4.0582 2.5355 -0.0002 8 6 3.4437 1.2854 0.0055 9 6 4.4852 0.2325 0.0118 10 6 4.2295 -1.1537 0.0139 11 1 3.2117 -1.5150 0.0112 12 6 5.2947 -2.0621 0.0195 13 7 6.5274 -1.6244 0.0224 14 14 4.9558 -3.8990 0.0216 15 1 4.8712 -4.3883 -1.3780 16 1 6.0557 -4.6045 0.7270 17 1 3.6710 -4.1645 0.7173 18 6 5.7231 0.7941 0.0154 19 6 5.5481 2.2944 -0.0014 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8901 23 1 0.2144 2.3162 0.0005 24 1 1.3256 4.5093 0.0019 25 1 3.7842 4.6506 0.0005 26 1 7.2655 -2.2538 0.0259 27 1 6.6634 0.2628 0.0198 28 1 5.9979 2.7255 -0.8956 29 1 5.9994 2.7254 0.8924 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261309494.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:37 Heat of formation + Delta-G solvation = -15.593290 kcal Electronic energy + Delta-G solvation = -13991.792617 eV Core-core repulsion = 11651.530538 eV Total energy + Delta-G solvation = -2340.262079 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.20122 -39.02073 -36.60838 -34.62272 -31.52928 -29.75719 -29.04160 -27.67264 -25.74385 -22.78783 -21.65099 -20.72493 -18.97396 -17.61356 -17.01620 -16.61531 -16.51959 -15.86649 -15.10579 -14.88064 -14.80562 -14.16476 -13.30914 -13.17008 -13.03010 -12.98204 -12.70726 -12.32640 -12.09506 -11.83803 -11.77085 -11.51247 -11.44683 -11.21467 -10.15281 -9.26152 -8.40771 -8.28063 -6.24540 0.37814 0.62310 1.34787 1.36727 1.51295 2.16877 2.28300 2.60980 2.94314 3.69260 3.88385 4.06286 4.18549 4.38386 4.42816 4.52081 4.66933 4.71647 4.74836 4.96376 5.06748 5.20547 5.25150 5.44185 5.58394 5.59647 5.87719 6.12378 6.15254 6.53634 6.72604 7.06009 7.22196 7.32379 8.55518 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.011610 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.337748 B = 2411.096771 C = 3334.931585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.217 4.217 5 C -0.089 4.089 6 C -0.149 4.149 7 C -0.088 4.088 8 C -0.122 4.122 9 C 0.024 3.976 10 C -0.459 4.459 11 H 0.069 0.931 12 C 0.007 3.993 13 N -0.837 5.837 14 Si 0.986 3.014 15 H -0.266 1.266 16 H -0.268 1.268 17 H -0.264 1.264 18 C -0.369 4.369 19 C -0.033 4.033 20 H 0.109 0.891 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.155 0.845 24 H 0.165 0.835 25 H 0.146 0.854 26 H 0.276 0.724 27 H 0.148 0.852 28 H 0.075 0.925 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.661 5.774 -0.047 11.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.070 3.930 4 C -0.236 4.236 5 C -0.106 4.106 6 C -0.167 4.167 7 C -0.088 4.088 8 C -0.123 4.123 9 C 0.023 3.977 10 C -0.490 4.490 11 H 0.087 0.913 12 C -0.202 4.202 13 N -0.467 5.467 14 Si 0.808 3.192 15 H -0.191 1.191 16 H -0.192 1.192 17 H -0.188 1.188 18 C -0.392 4.392 19 C -0.069 4.069 20 H 0.127 0.873 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.173 0.827 24 H 0.183 0.817 25 H 0.163 0.837 26 H 0.087 0.913 27 H 0.165 0.835 28 H 0.093 0.907 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.382 5.479 -0.041 10.865 hybrid contribution 0.000 -0.903 -0.009 0.903 sum -9.383 4.576 -0.050 10.439 Atomic orbital electron populations 1.23310 0.77393 1.04958 1.02128 1.86209 1.22765 1.27451 1.88545 1.19255 0.90712 0.85346 0.97721 1.21326 1.00655 0.91435 1.10138 1.21222 0.93794 0.97637 0.97966 1.20609 0.94012 0.96996 1.05096 1.20871 0.96986 0.92763 0.98180 1.20019 0.91212 0.96388 1.04690 1.18261 0.91218 0.91831 0.96430 1.19582 0.93969 0.91575 1.43831 0.91301 1.26706 0.94149 1.05736 0.93611 1.69715 1.00127 1.36944 1.39878 0.85141 0.78795 0.76191 0.79107 1.19060 1.19206 1.18768 1.24481 0.98936 0.92064 1.23730 1.19642 0.90398 0.96790 1.00105 0.87277 0.91544 0.91573 0.82714 0.81739 0.83663 0.91275 0.83512 0.90737 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 15 2 O -0.34 -14.55 8.81 -91.63 -0.81 -15.36 15 3 C 0.11 5.10 6.72 22.77 0.15 5.25 15 4 C -0.22 -7.29 9.02 22.32 0.20 -7.09 15 5 C -0.09 -2.66 10.05 22.31 0.22 -2.44 15 6 C -0.15 -5.20 10.03 22.21 0.22 -4.98 15 7 C -0.09 -3.98 6.33 -19.66 -0.12 -4.10 15 8 C -0.12 -6.37 6.15 -19.97 -0.12 -6.49 15 9 C 0.02 1.45 5.92 -20.53 -0.12 1.33 15 10 C -0.46 -27.75 9.13 23.36 0.21 -27.53 15 11 H 0.07 4.11 6.40 -2.91 -0.02 4.09 15 12 C 0.01 0.38 5.49 85.27 0.47 0.84 15 13 N -0.84 -48.25 10.11 21.84 0.22 -48.03 15 14 Si 0.99 43.06 29.56 68.60 2.03 45.09 15 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 16 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 17 H -0.26 -11.27 7.11 99.48 0.71 -10.57 15 18 C -0.37 -21.35 10.07 25.26 0.25 -21.09 15 19 C -0.03 -1.57 6.73 29.29 0.20 -1.37 15 20 H 0.11 2.57 8.14 -2.39 -0.02 2.55 15 21 H 0.07 1.56 7.66 -2.39 -0.02 1.54 15 22 H 0.07 1.56 7.66 -2.38 -0.02 1.54 15 23 H 0.16 3.92 6.28 -2.91 -0.02 3.90 15 24 H 0.17 3.33 8.06 -2.91 -0.02 3.31 15 25 H 0.15 4.00 8.06 -2.91 -0.02 3.98 15 26 H 0.28 14.46 8.30 -92.71 -0.77 13.69 15 27 H 0.15 9.03 5.41 -2.91 -0.02 9.01 15 28 H 0.07 3.22 8.14 -2.39 -0.02 3.20 15 29 H 0.07 3.16 8.14 -2.38 -0.02 3.14 15 Total: -1.00 -70.99 247.50 5.28 -65.71 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 1.16 Total: 18.68 kcal Atomic # 6 Polarization: -68.77 SS G_CDS: 2.68 Total: -66.09 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.22 Total: -48.03 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.81 Total: -15.36 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -70.99 5.28 -65.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261309494.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.117 kcal (2) G-P(sol) polarization free energy of solvation -70.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds