Wall clock time and date at job start Mon Mar 30 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00452 * 2 1 4 4 H 1.08995 * 109.47041 * 21.16304 * 3 2 1 5 5 C 1.50694 * 109.47438 * 141.16336 * 3 2 1 6 6 H 1.07998 * 120.00052 * 119.99607 * 5 3 2 7 7 C 1.37874 * 120.00420 * 300.00279 * 5 3 2 8 8 N 1.31519 * 119.99832 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00459 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47331 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47061 * 299.99670 * 9 7 5 12 12 H 1.48501 * 109.47222 * 59.99566 * 9 7 5 13 13 C 1.53004 * 109.46953 * 261.16598 * 3 2 1 14 14 H 1.09004 * 109.38865 * 185.36966 * 13 3 2 15 15 C 1.52582 * 109.39030 * 65.56554 * 13 3 2 16 16 C 1.52578 * 110.72599 * 169.17652 * 15 13 3 17 17 C 1.53103 * 109.95620 * 70.67401 * 16 15 13 18 18 S 1.81741 * 108.84112 * 296.97791 * 17 16 15 19 19 C 1.53099 * 109.38644 * 305.16842 * 13 3 2 20 20 H 1.09000 * 109.46817 * 305.62551 * 1 2 3 21 21 H 1.08996 * 109.46718 * 65.62091 * 1 2 3 22 22 H 1.08997 * 109.47348 * 185.62477 * 1 2 3 23 23 H 0.97004 * 119.99870 * 359.97438 * 8 7 5 24 24 H 1.09004 * 109.22489 * 289.49877 * 15 13 3 25 25 H 1.09004 * 109.22329 * 48.89716 * 15 13 3 26 26 H 1.08994 * 109.39314 * 190.82235 * 16 15 13 27 27 H 1.08997 * 109.39021 * 310.52771 * 16 15 13 28 28 H 1.08999 * 109.57310 * 56.78448 * 17 16 15 29 29 H 1.09001 * 109.57652 * 177.16900 * 17 16 15 30 30 H 1.08994 * 109.57589 * 302.98163 * 19 13 3 31 31 H 1.09000 * 109.57607 * 63.37103 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2827 2.0271 0.3710 5 6 3.2257 1.3141 0.8909 6 1 4.1936 1.5627 0.4815 7 6 3.1020 1.0047 2.2288 8 7 1.9232 0.7023 2.7276 9 14 4.6086 1.0148 3.3330 10 1 4.2107 0.6508 4.7166 11 1 5.5995 0.0311 2.8275 12 1 5.2133 2.3711 3.3330 13 6 2.4202 1.6811 -1.4254 14 1 2.9487 2.6343 -1.4106 15 6 1.1725 1.8071 -2.2947 16 6 1.5145 2.4357 -3.6423 17 6 2.3233 1.4491 -4.4888 18 16 3.8965 1.1051 -3.6464 19 6 3.3418 0.5976 -1.9916 20 1 -0.3633 0.5986 0.8353 21 1 -0.3632 0.4242 -0.9360 22 1 -0.3634 -1.0227 0.1007 23 1 1.1408 0.6974 2.1542 24 1 0.7474 0.8168 -2.4580 25 1 0.4404 2.4321 -1.7833 26 1 0.5937 2.6919 -4.1662 27 1 2.1012 3.3400 -3.4813 28 1 1.7615 0.5224 -4.6060 29 1 2.5210 1.8848 -5.4682 30 1 4.2064 0.4761 -1.3391 31 1 2.7984 -0.3447 -2.0602 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312976.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:59 Heat of formation + Delta-G solvation = -71.348132 kcal Electronic energy + Delta-G solvation = -13449.326283 eV Core-core repulsion = 11242.090444 eV Total energy + Delta-G solvation = -2207.235839 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.09320 -35.34869 -32.66834 -31.38667 -27.18335 -26.72608 -24.97752 -23.34293 -21.25809 -19.57375 -17.14746 -16.42312 -15.27830 -14.67120 -14.32153 -14.12636 -13.77702 -13.51671 -13.05654 -12.81264 -12.54666 -12.03891 -11.51850 -11.19197 -11.03683 -10.84252 -10.73258 -10.53567 -10.13958 -10.04817 -9.84761 -9.35507 -8.96127 -8.41974 -8.04446 -7.28714 -6.41688 -4.20117 2.21388 2.99279 3.42535 3.44753 3.62657 4.48383 4.92764 4.99161 5.04348 5.28271 5.49258 5.60823 5.63644 5.71146 5.87979 5.96020 6.05165 6.19820 6.22603 6.29211 6.33754 6.40570 6.62784 6.66542 6.86110 6.98315 8.02554 8.33788 8.63824 8.81551 9.60626 10.97771 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.036368 B = 0.010312 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.718382 B = 2714.688556 C = 3216.209399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.384 6.384 3 C 0.209 3.791 4 H 0.011 0.989 5 C -0.603 4.603 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.893 5.893 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.287 1.287 13 C -0.093 4.093 14 H 0.077 0.923 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.075 4.075 18 S -0.309 6.309 19 C -0.039 4.039 20 H 0.031 0.969 21 H 0.021 0.979 22 H 0.061 0.939 23 H 0.276 0.724 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 1.745 -9.904 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.303 6.303 3 C 0.152 3.848 4 H 0.029 0.971 5 C -0.640 4.640 6 H 0.076 0.924 7 C -0.175 4.175 8 N -0.529 5.529 9 Si 0.895 3.105 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.165 4.165 16 C -0.158 4.158 17 C -0.223 4.223 18 S -0.082 6.082 19 C -0.186 4.186 20 H 0.050 0.950 21 H 0.040 0.960 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.174 1.393 -8.795 8.907 hybrid contribution -1.991 0.309 -1.208 2.349 sum -2.164 1.702 -10.003 10.375 Atomic orbital electron populations 1.22621 0.85576 1.00503 0.98131 1.88187 1.15805 1.31978 1.94369 1.19960 0.93673 0.81616 0.89540 0.97106 1.22012 0.94299 1.52673 0.95033 0.92392 1.25851 1.02456 0.92437 0.96785 1.70728 0.99781 1.42274 1.40079 0.83581 0.74280 0.76601 0.76049 1.20734 1.21229 1.21306 1.21754 0.94319 0.98151 0.97119 0.90478 1.21731 0.98952 1.00773 0.95003 1.21722 0.99515 0.98544 0.96040 1.23321 0.96241 1.02140 1.00612 1.86637 1.15585 1.89456 1.16548 1.23420 1.03549 1.00898 0.90763 0.95046 0.96040 0.92022 0.91233 0.91910 0.91961 0.91722 0.90921 0.90472 0.88717 0.87031 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.01 101.05 1.01 1.60 16 2 O -0.38 -9.37 8.42 -35.23 -0.30 -9.67 16 3 C 0.21 5.10 1.43 -27.88 -0.04 5.06 16 4 H 0.01 0.29 7.42 -51.93 -0.39 -0.09 16 5 C -0.60 -16.49 8.05 -34.44 -0.28 -16.77 16 6 H 0.06 1.56 7.08 -52.49 -0.37 1.19 16 7 C 0.03 0.92 5.40 -17.82 -0.10 0.82 16 8 N -0.89 -26.58 13.53 55.43 0.75 -25.83 16 9 Si 1.07 24.85 29.90 -169.99 -5.08 19.77 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 13 C -0.09 -1.88 1.82 -90.78 -0.17 -2.05 16 14 H 0.08 1.62 8.06 -51.93 -0.42 1.20 16 15 C -0.13 -2.14 3.65 -27.16 -0.10 -2.24 16 16 C -0.12 -1.67 5.75 -26.89 -0.15 -1.83 16 17 C -0.07 -1.05 6.45 37.21 0.24 -0.81 16 18 S -0.31 -5.35 22.33 -107.50 -2.40 -7.75 16 19 C -0.04 -0.77 5.32 37.21 0.20 -0.57 16 20 H 0.03 0.66 6.95 -51.93 -0.36 0.30 16 21 H 0.02 0.38 5.87 -51.93 -0.30 0.07 16 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.28 8.05 5.02 -40.82 -0.20 7.84 16 24 H 0.06 1.07 6.74 -51.93 -0.35 0.72 16 25 H 0.06 1.03 8.02 -51.93 -0.42 0.62 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.11 2.44 6.88 -51.93 -0.36 2.08 16 31 H 0.08 1.67 7.67 -51.93 -0.40 1.27 16 LS Contribution 253.71 15.07 3.82 3.82 Total: -1.00 -29.34 253.71 -7.06 -36.40 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.47 Total: 0.04 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 0.62 Total: -16.78 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.75 Total: -25.83 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.30 Total: -9.67 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.77 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -2.40 Total: -7.75 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.34 -7.06 -36.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312976.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.949 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds