Wall clock time and date at job start Mon Mar 30 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00452 * 2 1 4 4 H 1.08995 * 109.47041 * 21.16304 * 3 2 1 5 5 C 1.50694 * 109.47438 * 141.16336 * 3 2 1 6 6 H 1.07998 * 120.00052 * 119.99607 * 5 3 2 7 7 C 1.37874 * 120.00420 * 300.00279 * 5 3 2 8 8 N 1.31519 * 119.99832 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00459 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47331 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47061 * 299.99670 * 9 7 5 12 12 H 1.48501 * 109.47222 * 59.99566 * 9 7 5 13 13 C 1.53004 * 109.46953 * 261.16598 * 3 2 1 14 14 H 1.09004 * 109.38865 * 185.36966 * 13 3 2 15 15 C 1.52582 * 109.39030 * 65.56554 * 13 3 2 16 16 C 1.52578 * 110.72599 * 169.17652 * 15 13 3 17 17 C 1.53103 * 109.95620 * 70.67401 * 16 15 13 18 18 S 1.81741 * 108.84112 * 296.97791 * 17 16 15 19 19 C 1.53099 * 109.38644 * 305.16842 * 13 3 2 20 20 H 1.09000 * 109.46817 * 305.62551 * 1 2 3 21 21 H 1.08996 * 109.46718 * 65.62091 * 1 2 3 22 22 H 1.08997 * 109.47348 * 185.62477 * 1 2 3 23 23 H 0.97004 * 119.99870 * 359.97438 * 8 7 5 24 24 H 1.09004 * 109.22489 * 289.49877 * 15 13 3 25 25 H 1.09004 * 109.22329 * 48.89716 * 15 13 3 26 26 H 1.08994 * 109.39314 * 190.82235 * 16 15 13 27 27 H 1.08997 * 109.39021 * 310.52771 * 16 15 13 28 28 H 1.08999 * 109.57310 * 56.78448 * 17 16 15 29 29 H 1.09001 * 109.57652 * 177.16900 * 17 16 15 30 30 H 1.08994 * 109.57589 * 302.98163 * 19 13 3 31 31 H 1.09000 * 109.57607 * 63.37103 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2827 2.0271 0.3710 5 6 3.2257 1.3141 0.8909 6 1 4.1936 1.5627 0.4815 7 6 3.1020 1.0047 2.2288 8 7 1.9232 0.7023 2.7276 9 14 4.6086 1.0148 3.3330 10 1 4.2107 0.6508 4.7166 11 1 5.5995 0.0311 2.8275 12 1 5.2133 2.3711 3.3330 13 6 2.4202 1.6811 -1.4254 14 1 2.9487 2.6343 -1.4106 15 6 1.1725 1.8071 -2.2947 16 6 1.5145 2.4357 -3.6423 17 6 2.3233 1.4491 -4.4888 18 16 3.8965 1.1051 -3.6464 19 6 3.3418 0.5976 -1.9916 20 1 -0.3633 0.5986 0.8353 21 1 -0.3632 0.4242 -0.9360 22 1 -0.3634 -1.0227 0.1007 23 1 1.1408 0.6974 2.1542 24 1 0.7474 0.8168 -2.4580 25 1 0.4404 2.4321 -1.7833 26 1 0.5937 2.6919 -4.1662 27 1 2.1012 3.3400 -3.4813 28 1 1.7615 0.5224 -4.6060 29 1 2.5210 1.8848 -5.4682 30 1 4.2064 0.4761 -1.3391 31 1 2.7984 -0.3447 -2.0602 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261312976.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:59 Heat of formation + Delta-G solvation = -88.720437 kcal Electronic energy + Delta-G solvation = -13450.079603 eV Core-core repulsion = 11242.090444 eV Total energy + Delta-G solvation = -2207.989159 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.81407 -36.87444 -34.70708 -32.92302 -28.85173 -28.27651 -26.76571 -25.12042 -22.72799 -21.17505 -19.16739 -17.90076 -16.99016 -16.23452 -15.84313 -15.78034 -15.60457 -15.12894 -14.47825 -14.16396 -14.12243 -13.70932 -13.27916 -12.73749 -12.66671 -12.37968 -12.34494 -12.07362 -11.95026 -11.69676 -11.45663 -11.07357 -10.64805 -10.46168 -9.88247 -8.67814 -8.62245 -6.41404 0.87722 1.52997 1.59716 1.61772 1.79382 2.55312 3.02335 3.61736 3.76397 3.77982 3.98525 4.05408 4.31035 4.35605 4.49307 4.55451 4.57260 4.61464 4.77165 4.84364 4.86192 4.95772 5.02903 5.12274 5.21351 5.35222 5.98977 6.15890 6.59042 6.82734 7.47411 8.78084 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.036368 B = 0.010312 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.718382 B = 2714.688556 C = 3216.209399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.210 3.790 4 H -0.011 1.011 5 C -0.617 4.617 6 H 0.053 0.947 7 C -0.018 4.018 8 N -0.924 5.924 9 Si 1.110 2.890 10 H -0.284 1.284 11 H -0.275 1.275 12 H -0.268 1.268 13 C -0.085 4.085 14 H 0.065 0.935 15 C -0.122 4.122 16 C -0.113 4.113 17 C -0.067 4.067 18 S -0.318 6.318 19 C -0.034 4.034 20 H 0.016 0.984 21 H 0.050 0.950 22 H 0.080 0.920 23 H 0.268 0.732 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 2.124 -11.784 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C 0.153 3.847 4 H 0.006 0.994 5 C -0.655 4.655 6 H 0.071 0.929 7 C -0.219 4.219 8 N -0.561 5.561 9 Si 0.932 3.068 10 H -0.209 1.209 11 H -0.200 1.200 12 H -0.193 1.193 13 C -0.106 4.106 14 H 0.083 0.917 15 C -0.160 4.160 16 C -0.151 4.151 17 C -0.214 4.214 18 S -0.091 6.091 19 C -0.182 4.182 20 H 0.035 0.965 21 H 0.069 0.931 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.143 0.857 30 H 0.100 0.900 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.415 1.779 -10.699 10.854 hybrid contribution -1.977 0.197 -0.710 2.109 sum -2.391 1.976 -11.408 11.823 Atomic orbital electron populations 1.22768 0.83367 1.01713 0.99035 1.88079 1.18224 1.31607 1.94698 1.19829 0.92114 0.81117 0.91671 0.99373 1.22407 0.95259 1.51925 0.95866 0.92898 1.27204 1.04199 0.91758 0.98775 1.70827 1.00313 1.44762 1.40209 0.83028 0.71652 0.77806 0.74286 1.20899 1.20018 1.19306 1.21582 0.96043 0.97411 0.95523 0.91669 1.21659 0.96914 1.01232 0.96146 1.21682 1.01126 0.97977 0.94362 1.23502 0.93822 1.02919 1.01192 1.86647 1.18582 1.89437 1.14482 1.23104 1.02113 1.00367 0.92581 0.96513 0.93123 0.90187 0.92087 0.91841 0.91850 0.88133 0.91188 0.89379 0.85666 0.90003 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 10.01 113.37 1.14 2.26 16 2 O -0.41 -20.07 8.42 -148.98 -1.26 -21.32 16 3 C 0.21 10.44 1.43 29.85 0.04 10.48 16 4 H -0.01 -0.60 7.42 -2.39 -0.02 -0.62 16 5 C -0.62 -34.60 8.05 25.60 0.21 -34.40 16 6 H 0.05 2.94 7.08 -2.91 -0.02 2.91 16 7 C -0.02 -1.02 5.40 84.65 0.46 -0.56 16 8 N -0.92 -56.26 13.53 21.45 0.29 -55.97 16 9 Si 1.11 50.51 29.90 68.60 2.05 52.56 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 C -0.09 -3.44 1.82 -10.90 -0.02 -3.46 16 14 H 0.06 2.75 8.06 -2.39 -0.02 2.73 16 15 C -0.12 -3.86 3.65 30.32 0.11 -3.74 16 16 C -0.11 -2.73 5.75 30.49 0.18 -2.56 16 17 C -0.07 -1.59 6.45 72.02 0.46 -1.13 16 18 S -0.32 -10.47 22.33 -56.49 -1.26 -11.73 16 19 C -0.03 -1.34 5.32 72.02 0.38 -0.96 16 20 H 0.02 0.70 6.95 -2.39 -0.02 0.69 16 21 H 0.05 1.71 5.87 -2.39 -0.01 1.70 16 22 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 23 H 0.27 16.13 5.02 -92.70 -0.47 15.67 16 24 H 0.06 2.00 6.74 -2.39 -0.02 1.99 16 25 H 0.06 1.98 8.02 -2.38 -0.02 1.97 16 26 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.78 8.06 -2.39 -0.02 1.76 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 3.69 6.88 -2.39 -0.02 3.68 16 31 H 0.07 2.96 7.67 -2.39 -0.02 2.94 16 Total: -1.00 -64.25 253.71 4.18 -60.07 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.40 Total: 10.46 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 2.96 Total: -34.07 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.29 Total: -55.97 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.26 Total: -21.32 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Atomic # 16 Polarization: -10.47 SS G_CDS: -1.26 Total: -11.73 kcal Total: -64.25 4.18 -60.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312976.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.652 kcal (2) G-P(sol) polarization free energy of solvation -64.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds