Wall clock time and date at job start Mon Mar 30 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 113.99889 * 2 1 4 4 H 1.09005 * 109.47430 * 341.45719 * 3 2 1 5 5 C 1.50706 * 109.47406 * 221.45446 * 3 2 1 6 6 H 1.07993 * 120.00311 * 244.85116 * 5 3 2 7 7 C 1.37877 * 119.99536 * 64.85146 * 5 3 2 8 8 N 1.31518 * 120.00137 * 355.11525 * 7 5 3 9 9 Si 1.86802 * 119.99665 * 174.84647 * 7 5 3 10 10 H 1.48498 * 109.47420 * 59.99846 * 9 7 5 11 11 H 1.48500 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46927 * 299.99206 * 9 7 5 13 13 C 1.53004 * 109.47143 * 101.45677 * 3 2 1 14 14 H 1.08996 * 109.38839 * 57.11958 * 13 3 2 15 15 C 1.52582 * 109.39013 * 297.31738 * 13 3 2 16 16 C 1.52576 * 110.72542 * 169.17276 * 15 13 3 17 17 C 1.53100 * 109.95765 * 70.67795 * 16 15 13 18 18 S 1.81748 * 108.83829 * 296.97343 * 17 16 15 19 19 C 1.53098 * 109.39068 * 176.82215 * 13 3 2 20 20 H 1.09004 * 109.46560 * 185.85384 * 1 2 3 21 21 H 1.08988 * 109.46796 * 305.85708 * 1 2 3 22 22 H 1.08994 * 109.46752 * 65.86085 * 1 2 3 23 23 H 0.97006 * 119.99758 * 180.02562 * 8 7 5 24 24 H 1.09003 * 109.22447 * 289.49563 * 15 13 3 25 25 H 1.09005 * 109.22422 * 48.85106 * 15 13 3 26 26 H 1.08998 * 109.38871 * 190.82222 * 16 15 13 27 27 H 1.08990 * 109.39440 * 310.52571 * 16 15 13 28 28 H 1.09003 * 109.57259 * 56.77451 * 17 16 15 29 29 H 1.08992 * 109.57929 * 177.16330 * 17 16 15 30 30 H 1.09004 * 109.57676 * 302.98065 * 19 13 3 31 31 H 1.09000 * 109.57485 * 63.36738 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2679 2.0337 -0.3268 5 6 3.1874 1.3313 -0.9406 6 1 4.1829 1.4953 -0.5555 7 6 2.9933 1.1455 -2.2930 8 7 1.7964 0.8505 -2.7511 9 14 4.4291 1.3202 -3.4752 10 1 5.4818 0.3332 -3.1249 11 1 3.9607 1.0738 -4.8626 12 1 4.9859 2.6935 -3.3780 13 6 2.4794 1.6548 1.4138 14 1 3.1832 0.8975 1.7590 15 6 1.2765 1.6935 2.3517 16 6 1.7286 1.7734 3.8067 17 6 2.3266 3.1534 4.0931 18 16 3.8065 3.3772 3.0620 19 6 3.1727 3.0197 1.3965 20 1 -0.3632 -1.0224 0.1048 21 1 -0.3632 0.6019 0.8328 22 1 -0.3632 0.4203 -0.9378 23 1 1.6600 0.7195 -3.7026 24 1 0.6663 2.5657 2.1169 25 1 0.6815 0.7913 2.2097 26 1 0.8730 1.6070 4.4611 27 1 2.4805 1.0071 3.9947 28 1 1.5949 3.9252 3.8541 29 1 2.6012 3.2212 5.1456 30 1 4.0002 3.0001 0.6872 31 1 2.4575 3.7889 1.1050 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312979.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:04 Heat of formation + Delta-G solvation = -65.408919 kcal Electronic energy + Delta-G solvation = -13336.465138 eV Core-core repulsion = 11129.486843 eV Total energy + Delta-G solvation = -2206.978295 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.77507 -35.13193 -32.67492 -31.40475 -27.26630 -26.60371 -24.95880 -23.31252 -21.08608 -19.45575 -16.64967 -16.27396 -15.36793 -14.75135 -14.44054 -13.85656 -13.57952 -13.42413 -13.02272 -12.76956 -12.21866 -12.08648 -11.51945 -11.00616 -10.95777 -10.93670 -10.76986 -10.37166 -10.25975 -10.00270 -9.64744 -9.39328 -9.00726 -8.54834 -7.85797 -7.25582 -6.09053 -4.18931 2.22994 2.99557 3.30047 3.34258 3.37333 4.37392 5.01085 5.05921 5.12130 5.36023 5.50858 5.64347 5.74573 5.84598 5.92600 6.08176 6.19666 6.29296 6.38742 6.44274 6.55242 6.73461 6.78536 6.86224 6.90560 7.33306 7.84576 8.21285 8.80088 9.02116 9.51179 10.99152 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.033270 B = 0.010656 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.403030 B = 2626.908655 C = 3341.505255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.226 3.774 4 H 0.019 0.981 5 C -0.528 4.528 6 H 0.063 0.937 7 C 0.076 3.924 8 N -0.868 5.868 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.099 4.099 14 H 0.076 0.924 15 C -0.130 4.130 16 C -0.119 4.119 17 C -0.076 4.076 18 S -0.306 6.306 19 C -0.047 4.047 20 H 0.052 0.948 21 H 0.015 0.985 22 H 0.039 0.961 23 H 0.262 0.738 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 3.058 9.070 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.169 3.831 4 H 0.037 0.963 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.129 4.129 8 N -0.505 5.505 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.120 4.120 14 H 0.094 0.906 15 C -0.167 4.167 16 C -0.158 4.158 17 C -0.224 4.224 18 S -0.079 6.079 19 C -0.195 4.195 20 H 0.071 0.929 21 H 0.034 0.966 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.826 3.181 9.248 9.814 hybrid contribution -0.746 -0.037 -1.074 1.308 sum -1.572 3.143 8.174 8.898 Atomic orbital electron populations 1.22525 0.85557 0.99205 0.98606 1.88069 1.15884 1.31336 1.94287 1.19685 0.93214 0.82222 0.87994 0.96316 1.21187 0.93477 1.50698 0.91177 0.91854 1.25046 0.95676 0.93677 0.98497 1.69982 1.21471 1.44974 1.14051 0.86656 0.82709 0.78786 0.79842 1.20004 1.21235 1.20047 1.21821 0.96172 0.95136 0.98825 0.90585 1.21754 0.99046 1.02306 0.93612 1.21712 1.00648 0.95755 0.97663 1.23344 0.97590 1.00442 1.01012 1.86632 1.20906 1.92107 1.08211 1.23547 1.04159 0.99898 0.91904 0.92925 0.96645 0.94261 0.92862 0.92856 0.90576 0.91809 0.90867 0.90502 0.88775 0.86436 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.22 101.05 1.03 1.85 16 2 O -0.38 -9.58 9.57 -35.23 -0.34 -9.92 16 3 C 0.23 5.56 1.68 -27.88 -0.05 5.51 16 4 H 0.02 0.50 7.69 -51.93 -0.40 0.10 16 5 C -0.53 -14.21 7.87 -34.44 -0.27 -14.48 16 6 H 0.06 1.67 6.70 -52.49 -0.35 1.32 16 7 C 0.08 2.10 5.43 -17.82 -0.10 2.00 16 8 N -0.87 -24.69 12.95 55.43 0.72 -23.97 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 C -0.10 -2.01 1.82 -90.78 -0.16 -2.18 16 14 H 0.08 1.66 8.06 -51.93 -0.42 1.24 16 15 C -0.13 -2.22 4.36 -27.16 -0.12 -2.34 16 16 C -0.12 -1.70 5.75 -26.90 -0.15 -1.85 16 17 C -0.08 -1.04 6.46 37.21 0.24 -0.80 16 18 S -0.31 -5.17 22.33 -107.50 -2.40 -7.57 16 19 C -0.05 -0.90 5.49 37.21 0.20 -0.70 16 20 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.02 0.29 5.82 -51.94 -0.30 -0.01 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 25 H 0.08 1.34 5.40 -51.93 -0.28 1.06 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.12 2.40 6.42 -51.93 -0.33 2.07 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 258.16 15.07 3.89 3.89 Total: -1.00 -28.43 258.16 -7.12 -35.56 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.59 Total: -0.98 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 0.62 Total: -12.99 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.72 Total: -23.97 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.34 Total: -9.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -2.40 Total: -7.57 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.43 -7.12 -35.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312979.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.853 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds