Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 113.99889 * 2 1 4 4 H 1.09005 * 109.47430 * 341.45719 * 3 2 1 5 5 C 1.50706 * 109.47406 * 221.45446 * 3 2 1 6 6 H 1.07993 * 120.00311 * 244.85116 * 5 3 2 7 7 C 1.37877 * 119.99536 * 64.85146 * 5 3 2 8 8 N 1.31518 * 120.00137 * 355.11525 * 7 5 3 9 9 Si 1.86802 * 119.99665 * 174.84647 * 7 5 3 10 10 H 1.48498 * 109.47420 * 59.99846 * 9 7 5 11 11 H 1.48500 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46927 * 299.99206 * 9 7 5 13 13 C 1.53004 * 109.47143 * 101.45677 * 3 2 1 14 14 H 1.08996 * 109.38839 * 57.11958 * 13 3 2 15 15 C 1.52582 * 109.39013 * 297.31738 * 13 3 2 16 16 C 1.52576 * 110.72542 * 169.17276 * 15 13 3 17 17 C 1.53100 * 109.95765 * 70.67795 * 16 15 13 18 18 S 1.81748 * 108.83829 * 296.97343 * 17 16 15 19 19 C 1.53098 * 109.39068 * 176.82215 * 13 3 2 20 20 H 1.09004 * 109.46560 * 185.85384 * 1 2 3 21 21 H 1.08988 * 109.46796 * 305.85708 * 1 2 3 22 22 H 1.08994 * 109.46752 * 65.86085 * 1 2 3 23 23 H 0.97006 * 119.99758 * 180.02562 * 8 7 5 24 24 H 1.09003 * 109.22447 * 289.49563 * 15 13 3 25 25 H 1.09005 * 109.22422 * 48.85106 * 15 13 3 26 26 H 1.08998 * 109.38871 * 190.82222 * 16 15 13 27 27 H 1.08990 * 109.39440 * 310.52571 * 16 15 13 28 28 H 1.09003 * 109.57259 * 56.77451 * 17 16 15 29 29 H 1.08992 * 109.57929 * 177.16330 * 17 16 15 30 30 H 1.09004 * 109.57676 * 302.98065 * 19 13 3 31 31 H 1.09000 * 109.57485 * 63.36738 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2679 2.0337 -0.3268 5 6 3.1874 1.3313 -0.9406 6 1 4.1829 1.4953 -0.5555 7 6 2.9933 1.1455 -2.2930 8 7 1.7964 0.8505 -2.7511 9 14 4.4291 1.3202 -3.4752 10 1 5.4818 0.3332 -3.1249 11 1 3.9607 1.0738 -4.8626 12 1 4.9859 2.6935 -3.3780 13 6 2.4794 1.6548 1.4138 14 1 3.1832 0.8975 1.7590 15 6 1.2765 1.6935 2.3517 16 6 1.7286 1.7734 3.8067 17 6 2.3266 3.1534 4.0931 18 16 3.8065 3.3772 3.0620 19 6 3.1727 3.0197 1.3965 20 1 -0.3632 -1.0224 0.1048 21 1 -0.3632 0.6019 0.8328 22 1 -0.3632 0.4203 -0.9378 23 1 1.6600 0.7195 -3.7026 24 1 0.6663 2.5657 2.1169 25 1 0.6815 0.7913 2.2097 26 1 0.8730 1.6070 4.4611 27 1 2.4805 1.0071 3.9947 28 1 1.5949 3.9252 3.8541 29 1 2.6012 3.2212 5.1456 30 1 4.0002 3.0001 0.6872 31 1 2.4575 3.7889 1.1050 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261312979.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -82.165967 kcal Electronic energy + Delta-G solvation = -13337.191778 eV Core-core repulsion = 11129.486843 eV Total energy + Delta-G solvation = -2207.704936 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.47411 -36.71748 -34.66297 -32.95931 -29.00658 -28.05784 -26.83963 -24.97152 -22.54745 -21.07262 -18.65769 -17.73598 -17.08544 -16.49953 -16.10723 -15.40237 -15.22564 -15.08311 -14.32160 -14.20576 -13.84241 -13.65923 -13.27692 -12.81935 -12.72024 -12.36448 -12.28245 -12.03919 -11.88072 -11.68421 -11.34198 -11.16950 -10.62085 -10.54929 -9.68589 -8.61998 -8.16819 -6.33105 0.92259 1.41214 1.42475 1.49873 1.65799 2.40059 3.04394 3.73030 3.84983 3.90111 4.03992 4.26092 4.36970 4.50006 4.57657 4.66691 4.72835 4.78000 4.90613 4.94937 4.99891 5.10863 5.14207 5.29354 5.33539 5.50400 5.77065 6.20242 6.73215 7.12907 7.40310 8.90587 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.033270 B = 0.010656 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.403030 B = 2626.908655 C = 3341.505255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.405 6.405 3 C 0.227 3.773 4 H -0.005 1.005 5 C -0.546 4.546 6 H 0.061 0.939 7 C 0.026 3.974 8 N -0.899 5.899 9 Si 0.954 3.046 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.266 1.266 13 C -0.089 4.089 14 H 0.057 0.943 15 C -0.126 4.126 16 C -0.112 4.112 17 C -0.067 4.067 18 S -0.316 6.316 19 C -0.046 4.046 20 H 0.075 0.925 21 H 0.043 0.957 22 H 0.015 0.985 23 H 0.262 0.738 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 3.478 10.736 11.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.324 6.324 3 C 0.170 3.830 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.079 0.921 7 C -0.176 4.176 8 N -0.537 5.537 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.191 1.191 13 C -0.109 4.109 14 H 0.076 0.924 15 C -0.163 4.163 16 C -0.151 4.151 17 C -0.215 4.215 18 S -0.089 6.089 19 C -0.194 4.194 20 H 0.094 0.906 21 H 0.061 0.939 22 H 0.033 0.967 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.141 0.859 30 H 0.113 0.887 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.958 3.606 10.924 11.543 hybrid contribution -0.749 -0.178 -1.525 1.708 sum -1.706 3.428 9.399 10.149 Atomic orbital electron populations 1.22611 0.83546 1.01039 0.98472 1.87974 1.18171 1.31661 1.94595 1.19593 0.91843 0.81366 0.90219 0.98750 1.21573 0.94262 1.50375 0.92156 0.92124 1.25831 0.98106 0.93507 1.00191 1.70099 1.23183 1.46169 1.14233 0.85685 0.79633 0.79023 0.77737 1.19888 1.20838 1.19079 1.21607 0.97187 0.95153 0.96977 0.92443 1.21689 0.97388 1.02280 0.94971 1.21660 1.01763 0.95854 0.95833 1.23505 0.95918 1.00504 1.01561 1.86654 1.23332 1.91982 1.06959 1.23295 1.03269 0.99191 0.93599 0.90646 0.93908 0.96655 0.92950 0.92309 0.91105 0.88396 0.91533 0.89134 0.85865 0.88715 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.70 10.22 113.37 1.16 2.86 16 2 O -0.40 -20.81 9.57 -148.98 -1.43 -22.24 16 3 C 0.23 11.39 1.68 29.85 0.05 11.44 16 4 H -0.01 -0.28 7.69 -2.38 -0.02 -0.30 16 5 C -0.55 -30.12 7.87 25.60 0.20 -29.91 16 6 H 0.06 3.28 6.70 -2.91 -0.02 3.26 16 7 C 0.03 1.44 5.43 84.65 0.46 1.90 16 8 N -0.90 -52.26 12.95 21.45 0.28 -51.98 16 9 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 C -0.09 -3.60 1.82 -10.90 -0.02 -3.62 16 14 H 0.06 2.52 8.06 -2.39 -0.02 2.50 16 15 C -0.13 -4.08 4.36 30.31 0.13 -3.94 16 16 C -0.11 -2.82 5.75 30.49 0.18 -2.64 16 17 C -0.07 -1.60 6.46 72.02 0.46 -1.13 16 18 S -0.32 -10.16 22.33 -56.49 -1.26 -11.42 16 19 C -0.05 -1.73 5.49 72.01 0.40 -1.34 16 20 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 21 H 0.04 1.56 5.82 -2.39 -0.01 1.54 16 22 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 24 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 25 H 0.07 2.36 5.40 -2.38 -0.01 2.35 16 26 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 1.79 8.06 -2.39 -0.02 1.78 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.09 3.98 6.42 -2.39 -0.02 3.97 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -61.71 258.16 3.73 -57.98 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.10 Total: 8.33 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 3.02 Total: -26.40 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.28 Total: -51.98 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.43 Total: -22.24 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -10.16 SS G_CDS: -1.26 Total: -11.42 kcal Total: -61.71 3.73 -57.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312979.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.189 kcal (2) G-P(sol) polarization free energy of solvation -61.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds