Wall clock time and date at job start Mon Mar 30 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86802 * 120.00241 * 2 1 4 4 H 1.48499 * 109.47227 * 274.68578 * 3 2 1 5 5 H 1.48503 * 109.46921 * 34.68310 * 3 2 1 6 6 H 1.48501 * 109.47314 * 154.68146 * 3 2 1 7 7 C 1.40003 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99615 * 197.54305 * 7 2 1 9 9 C 1.40937 * 119.99812 * 17.55162 * 7 2 1 10 10 C 1.36255 * 120.46232 * 25.42748 * 9 7 2 11 11 C 1.50414 * 120.44709 * 180.72327 * 10 9 7 12 12 C 1.52672 * 110.66662 * 323.84385 * 11 10 9 13 13 C 1.50533 * 110.15368 * 51.24189 * 12 11 10 14 14 C 1.37838 * 120.51901 * 144.69375 * 13 12 11 15 15 C 1.38872 * 119.95400 * 179.82394 * 14 13 12 16 16 O 1.35863 * 119.87474 * 179.97438 * 15 14 13 17 17 C 1.38866 * 120.24533 * 359.93736 * 15 14 13 18 18 C 1.37974 * 120.05929 * 0.07649 * 17 15 14 19 19 C 1.39127 * 119.74395 * 0.02562 * 18 17 15 20 20 H 0.97000 * 119.99889 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.78914 * 0.58596 * 10 9 7 22 22 H 1.08993 * 109.23853 * 203.54183 * 11 10 9 23 23 H 1.08999 * 109.24285 * 84.14837 * 11 10 9 24 24 H 1.08997 * 109.36333 * 291.03235 * 12 11 10 25 25 H 1.08999 * 109.24509 * 171.37966 * 12 11 10 26 26 H 1.07999 * 120.02351 * 359.82000 * 14 13 12 27 27 H 0.96689 * 114.00166 * 269.97837 * 16 15 14 28 28 H 1.08000 * 119.96612 * 180.02562 * 17 15 14 29 29 H 1.07997 * 120.13339 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3906 2.1036 -1.3954 5 1 1.4926 2.6221 0.7967 6 1 3.5857 1.4136 0.5987 7 6 2.0080 -1.2125 0.0005 8 1 3.0504 -1.2341 0.2825 9 6 1.3525 -2.4047 -0.3670 10 6 0.2657 -2.3706 -1.1882 11 6 -0.4434 -3.6418 -1.5672 12 6 0.5540 -4.7849 -1.7380 13 6 1.4459 -4.8800 -0.5291 14 6 1.8796 -6.1067 -0.0739 15 6 2.7050 -6.1806 1.0404 16 8 3.1311 -7.3906 1.4879 17 6 3.0972 -5.0223 1.6984 18 6 2.6660 -3.7917 1.2476 19 6 1.8373 -3.7166 0.1326 20 1 -0.4850 0.8400 -0.0004 21 1 -0.0904 -1.4243 -1.5678 22 1 -0.9783 -3.4889 -2.5045 23 1 -1.1571 -3.9018 -0.7854 24 1 1.1636 -4.6034 -2.6232 25 1 0.0098 -5.7214 -1.8601 26 1 1.5775 -7.0098 -0.5835 27 1 2.5446 -7.7976 2.1399 28 1 3.7396 -5.0850 2.5643 29 1 2.9700 -2.8901 1.7586 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261313498.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:57 Heat of formation + Delta-G solvation = -23.120624 kcal Electronic energy + Delta-G solvation = -13852.229708 eV Core-core repulsion = 11511.641219 eV Total energy + Delta-G solvation = -2340.588489 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.33916 -37.09070 -34.40462 -33.37649 -31.01938 -28.89738 -27.66679 -25.17715 -22.58379 -21.51797 -20.83607 -18.21971 -17.28318 -16.37281 -15.22751 -14.99706 -14.82226 -14.19827 -13.45938 -13.34998 -12.51805 -12.48313 -11.99602 -11.63444 -11.38655 -11.30350 -11.11220 -10.89176 -10.77762 -10.25398 -10.04376 -9.37610 -9.23713 -9.06916 -8.35213 -8.13424 -6.70019 -6.50435 -4.13616 1.80163 2.03747 3.06713 3.18760 3.21851 3.80869 4.11012 4.50354 4.74276 5.41744 5.47394 5.52156 5.80736 5.97071 6.08424 6.15026 6.26962 6.36856 6.60168 6.71393 6.78395 6.98317 7.04043 7.16752 7.21510 7.39593 7.46766 7.53475 8.07499 8.16777 8.39583 8.89786 9.11793 9.26115 10.48506 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.036784 B = 0.009342 C = 0.007743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.018352 B = 2996.435007 C = 3615.412172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.075 3.925 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.068 0.932 9 C 0.059 3.941 10 C -0.297 4.297 11 C -0.056 4.056 12 C -0.073 4.073 13 C -0.074 4.074 14 C -0.148 4.148 15 C 0.068 3.932 16 O -0.504 6.504 17 C -0.153 4.153 18 C -0.096 4.096 19 C -0.016 4.016 20 H 0.272 0.728 21 H 0.114 0.886 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.116 0.884 27 H 0.378 0.622 28 H 0.117 0.883 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -6.907 1.111 7.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.086 0.914 9 C 0.058 3.942 10 C -0.319 4.319 11 C -0.093 4.093 12 C -0.110 4.110 13 C -0.074 4.074 14 C -0.166 4.166 15 C 0.024 3.976 16 O -0.313 6.313 17 C -0.172 4.172 18 C -0.114 4.114 19 C -0.016 4.016 20 H 0.083 0.917 21 H 0.132 0.868 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.134 0.866 27 H 0.232 0.768 28 H 0.135 0.865 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.613 -6.658 0.747 6.891 hybrid contribution -0.012 0.680 0.474 0.829 sum 1.601 -5.978 1.221 6.308 Atomic orbital electron populations 1.69843 1.07242 1.28031 1.38029 1.25653 0.94576 1.00405 0.93330 0.86474 0.80535 0.81799 0.78825 1.19764 1.20696 1.18967 1.19137 0.97280 0.91125 1.41921 0.91416 1.17470 0.95122 0.88213 0.93426 1.22833 1.05074 0.95583 1.08390 1.19986 0.96191 0.94253 0.98864 1.20388 0.96756 0.98827 0.95057 1.19902 0.98049 0.91952 0.97506 1.21039 0.99749 0.97497 0.98323 1.18353 0.98929 0.84333 0.95982 1.84807 1.51469 1.32387 1.62666 1.21264 1.02525 0.92435 1.00930 1.21151 0.96901 0.96695 0.96663 1.19699 0.93715 0.94773 0.93410 0.91679 0.86788 0.93539 0.94321 0.91361 0.92564 0.86575 0.76843 0.86536 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.62 11.03 55.55 0.61 -21.00 15 2 C 0.07 1.94 5.11 -17.33 -0.09 1.86 15 3 Si 0.90 19.50 29.59 -169.99 -5.03 14.47 15 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 15 7 C -0.46 -12.43 8.24 -37.90 -0.31 -12.75 15 8 H 0.07 1.76 7.45 -52.48 -0.39 1.37 15 9 C 0.06 1.56 5.57 -105.35 -0.59 0.97 15 10 C -0.30 -7.66 8.79 -35.16 -0.31 -7.97 15 11 C -0.06 -1.20 6.06 -28.19 -0.17 -1.37 15 12 C -0.07 -1.41 5.91 -28.13 -0.17 -1.58 15 13 C -0.07 -1.54 5.66 -104.40 -0.59 -2.14 15 14 C -0.15 -2.73 9.63 -39.49 -0.38 -3.11 15 15 C 0.07 1.22 6.71 -39.11 -0.26 0.96 15 16 O -0.50 -7.72 13.49 -19.31 -0.26 -7.98 15 17 C -0.15 -2.84 9.98 -39.45 -0.39 -3.23 15 18 C -0.10 -2.04 9.40 -39.35 -0.37 -2.41 15 19 C -0.02 -0.37 5.76 -104.88 -0.60 -0.98 15 20 H 0.27 6.75 8.30 -40.82 -0.34 6.41 15 21 H 0.11 3.18 6.13 -52.49 -0.32 2.86 15 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 25 H 0.06 0.92 8.06 -51.93 -0.42 0.50 15 26 H 0.12 1.87 8.06 -52.49 -0.42 1.45 15 27 H 0.38 3.84 9.06 45.56 0.41 4.25 15 28 H 0.12 1.86 8.06 -52.49 -0.42 1.44 15 29 H 0.13 2.73 7.18 -52.49 -0.38 2.36 15 LS Contribution 248.96 15.07 3.75 3.75 Total: -1.00 -28.97 248.96 -7.50 -36.48 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -2.34 Total: 6.03 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -4.23 Total: -31.74 kcal Atomic # 7 Polarization: -21.62 SS G_CDS: 0.61 Total: -21.00 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.26 Total: -7.98 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.97 -7.50 -36.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261313498.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.356 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds