Wall clock time and date at job start Mon Mar 30 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86802 * 120.00241 * 2 1 4 4 H 1.48499 * 109.47227 * 274.68578 * 3 2 1 5 5 H 1.48503 * 109.46921 * 34.68310 * 3 2 1 6 6 H 1.48501 * 109.47314 * 154.68146 * 3 2 1 7 7 C 1.40003 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99615 * 197.54305 * 7 2 1 9 9 C 1.40937 * 119.99812 * 17.55162 * 7 2 1 10 10 C 1.36255 * 120.46232 * 25.42748 * 9 7 2 11 11 C 1.50414 * 120.44709 * 180.72327 * 10 9 7 12 12 C 1.52672 * 110.66662 * 323.84385 * 11 10 9 13 13 C 1.50533 * 110.15368 * 51.24189 * 12 11 10 14 14 C 1.37838 * 120.51901 * 144.69375 * 13 12 11 15 15 C 1.38872 * 119.95400 * 179.82394 * 14 13 12 16 16 O 1.35863 * 119.87474 * 179.97438 * 15 14 13 17 17 C 1.38866 * 120.24533 * 359.93736 * 15 14 13 18 18 C 1.37974 * 120.05929 * 0.07649 * 17 15 14 19 19 C 1.39127 * 119.74395 * 0.02562 * 18 17 15 20 20 H 0.97000 * 119.99889 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.78914 * 0.58596 * 10 9 7 22 22 H 1.08993 * 109.23853 * 203.54183 * 11 10 9 23 23 H 1.08999 * 109.24285 * 84.14837 * 11 10 9 24 24 H 1.08997 * 109.36333 * 291.03235 * 12 11 10 25 25 H 1.08999 * 109.24509 * 171.37966 * 12 11 10 26 26 H 1.07999 * 120.02351 * 359.82000 * 14 13 12 27 27 H 0.96689 * 114.00166 * 269.97837 * 16 15 14 28 28 H 1.08000 * 119.96612 * 180.02562 * 17 15 14 29 29 H 1.07997 * 120.13339 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3906 2.1036 -1.3954 5 1 1.4926 2.6221 0.7967 6 1 3.5857 1.4136 0.5987 7 6 2.0080 -1.2125 0.0005 8 1 3.0504 -1.2341 0.2825 9 6 1.3525 -2.4047 -0.3670 10 6 0.2657 -2.3706 -1.1882 11 6 -0.4434 -3.6418 -1.5672 12 6 0.5540 -4.7849 -1.7380 13 6 1.4459 -4.8800 -0.5291 14 6 1.8796 -6.1067 -0.0739 15 6 2.7050 -6.1806 1.0404 16 8 3.1311 -7.3906 1.4879 17 6 3.0972 -5.0223 1.6984 18 6 2.6660 -3.7917 1.2476 19 6 1.8373 -3.7166 0.1326 20 1 -0.4850 0.8400 -0.0004 21 1 -0.0904 -1.4243 -1.5678 22 1 -0.9783 -3.4889 -2.5045 23 1 -1.1571 -3.9018 -0.7854 24 1 1.1636 -4.6034 -2.6232 25 1 0.0098 -5.7214 -1.8601 26 1 1.5775 -7.0098 -0.5835 27 1 2.5446 -7.7976 2.1399 28 1 3.7396 -5.0850 2.5643 29 1 2.9700 -2.8901 1.7586 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261313498.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:57 Heat of formation + Delta-G solvation = -40.870053 kcal Electronic energy + Delta-G solvation = -13852.999381 eV Core-core repulsion = 11511.641219 eV Total energy + Delta-G solvation = -2341.358162 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84846 -38.53515 -36.12965 -35.07230 -32.75951 -30.52109 -29.30941 -27.03425 -24.19260 -23.09628 -22.50895 -19.91744 -18.74227 -18.11201 -17.07195 -16.51587 -16.28032 -15.80929 -15.06966 -14.98946 -14.21272 -13.99222 -13.65450 -13.30106 -13.12563 -12.86357 -12.82388 -12.62402 -12.37328 -11.96113 -11.60358 -11.13848 -10.97239 -10.93470 -10.07860 -9.64708 -8.49320 -8.46867 -6.17802 0.24368 0.51678 1.32137 1.38834 1.50413 2.05532 2.27625 2.83185 3.37029 3.52900 3.97874 4.08586 4.29936 4.48674 4.50844 4.57972 4.74347 4.81072 5.07500 5.16563 5.22278 5.28701 5.37297 5.51152 5.53684 5.61743 5.85305 5.96074 6.17676 6.39373 6.90592 6.96022 7.13359 7.32745 8.53781 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.036784 B = 0.009342 C = 0.007743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.018352 B = 2996.435007 C = 3615.412172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.031 3.969 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.063 0.937 9 C 0.040 3.960 10 C -0.321 4.321 11 C -0.052 4.052 12 C -0.069 4.069 13 C -0.081 4.081 14 C -0.145 4.145 15 C 0.088 3.912 16 O -0.503 6.503 17 C -0.153 4.153 18 C -0.107 4.107 19 C -0.061 4.061 20 H 0.278 0.722 21 H 0.082 0.918 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.149 0.851 27 H 0.406 0.594 28 H 0.143 0.857 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 -8.805 1.402 9.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.180 4.180 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.038 3.962 10 C -0.343 4.343 11 C -0.089 4.089 12 C -0.105 4.105 13 C -0.082 4.082 14 C -0.164 4.164 15 C 0.044 3.956 16 O -0.316 6.316 17 C -0.171 4.171 18 C -0.125 4.125 19 C -0.061 4.061 20 H 0.088 0.912 21 H 0.100 0.900 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.166 0.834 27 H 0.265 0.735 28 H 0.161 0.839 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.350 -8.583 1.053 8.961 hybrid contribution -0.215 1.133 0.455 1.240 sum 2.134 -7.451 1.509 7.896 Atomic orbital electron populations 1.69932 1.08718 1.29178 1.38712 1.26500 0.95356 1.03714 0.92444 0.85383 0.79235 0.77250 0.78926 1.19373 1.19675 1.18415 1.19426 0.97381 0.92546 1.43350 0.91875 1.17868 0.95287 0.89872 0.93140 1.22905 1.05790 0.96326 1.09322 1.19935 0.96421 0.93312 0.99226 1.20388 0.96260 0.99338 0.94557 1.20106 0.98235 0.92015 0.97803 1.21314 0.99187 0.97529 0.98339 1.18396 0.96956 0.85107 0.95150 1.84738 1.52302 1.30914 1.63610 1.21470 1.02483 0.91535 1.01656 1.21138 0.97216 0.97684 0.96487 1.19716 0.96396 0.94447 0.95519 0.91206 0.89976 0.91962 0.94919 0.91134 0.88747 0.83380 0.73527 0.83902 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.86 11.03 21.84 0.24 -46.62 15 2 C 0.03 1.69 5.11 85.27 0.44 2.12 15 3 Si 0.97 41.04 29.59 68.60 2.03 43.07 15 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 7 C -0.50 -27.81 8.24 23.36 0.19 -27.62 15 8 H 0.06 3.45 7.45 -2.91 -0.02 3.43 15 9 C 0.04 2.18 5.57 -20.34 -0.11 2.06 15 10 C -0.32 -17.30 8.79 25.13 0.22 -17.08 15 11 C -0.05 -2.24 6.06 29.65 0.18 -2.06 15 12 C -0.07 -2.52 5.91 29.69 0.18 -2.35 15 13 C -0.08 -3.28 5.66 -19.72 -0.11 -3.40 15 14 C -0.15 -4.87 9.63 22.33 0.22 -4.66 15 15 C 0.09 2.85 6.71 22.57 0.15 3.00 15 16 O -0.50 -12.92 13.49 -92.01 -1.24 -14.16 15 17 C -0.15 -5.34 9.98 22.36 0.22 -5.12 15 18 C -0.11 -4.58 9.40 22.42 0.21 -4.37 15 19 C -0.06 -2.88 5.76 -20.03 -0.12 -3.00 15 20 H 0.28 14.24 8.30 -92.71 -0.77 13.47 15 21 H 0.08 4.85 6.13 -2.91 -0.02 4.84 15 22 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 24 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 25 H 0.09 2.74 8.06 -2.39 -0.02 2.72 15 26 H 0.15 3.99 8.06 -2.91 -0.02 3.97 15 27 H 0.41 6.09 9.06 -74.06 -0.67 5.42 15 28 H 0.14 4.14 8.06 -2.91 -0.02 4.12 15 29 H 0.12 5.14 7.18 -2.91 -0.02 5.12 15 Total: -1.00 -64.62 248.96 3.19 -61.43 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.50 Total: 18.74 kcal Atomic # 6 Polarization: -64.12 SS G_CDS: 1.66 Total: -62.45 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.24 Total: -46.62 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.24 Total: -14.16 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -64.62 3.19 -61.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261313498.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.560 kcal (2) G-P(sol) polarization free energy of solvation -64.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds