Wall clock time and date at job start Mon Mar 30 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 S 1.81401 * 109.47240 * 119.99460 * 2 1 3 13 13 C 1.81397 * 103.00070 * 295.00594 * 12 2 1 14 14 H 1.08994 * 110.43817 * 52.45065 * 13 12 2 15 15 C 1.54813 * 110.48503 * 289.76245 * 13 12 2 16 16 C 1.54998 * 102.09193 * 220.44178 * 15 13 12 17 17 O 1.44378 * 103.48899 * 37.02848 * 16 15 13 18 18 C 1.43747 * 106.97603 * 319.93467 * 17 16 15 19 19 H 1.08999 * 110.00455 * 146.00832 * 18 17 16 20 20 C 1.53001 * 109.88023 * 267.09386 * 18 17 16 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.09000 * 110.91089 * 338.64443 * 15 13 12 26 26 H 1.09001 * 110.90762 * 102.25323 * 15 13 12 27 27 H 1.09001 * 110.61949 * 278.52503 * 16 15 13 28 28 H 1.09000 * 110.75401 * 155.58914 * 16 15 13 29 29 H 1.08996 * 109.46851 * 177.83526 * 20 18 17 30 30 H 1.08997 * 109.46530 * 297.83031 * 20 18 17 31 31 H 1.08994 * 109.47253 * 57.82722 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 16 2.1347 -0.8550 1.4812 13 6 1.5663 0.2154 2.8309 14 1 0.4972 0.4072 2.7401 15 6 2.3595 1.5449 2.8386 16 6 2.5868 1.7786 4.3539 17 8 2.8094 0.4488 4.8701 18 6 1.8858 -0.4229 4.1966 19 1 2.3379 -1.4039 4.0505 20 6 0.6035 -0.5586 5.0202 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7088 1.1611 -3.4845 25 1 3.3092 1.4344 2.3153 26 1 1.7695 2.3524 2.4049 27 1 1.7031 2.2246 4.8103 28 1 3.4619 2.4066 4.5209 29 1 -0.1065 -1.1896 4.4856 30 1 0.8371 -1.0105 5.9842 31 1 0.1667 0.4275 5.1775 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300336048.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:08 Heat of formation + Delta-G solvation = -64.191713 kcal Electronic energy + Delta-G solvation = -12869.472979 eV Core-core repulsion = 10662.547465 eV Total energy + Delta-G solvation = -2206.925513 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.24324 -34.04906 -32.09874 -31.09957 -30.23308 -26.25839 -25.26729 -21.78370 -21.25724 -20.71557 -16.93818 -16.41823 -15.88357 -15.18705 -14.63435 -14.04570 -13.63284 -13.17889 -12.96688 -12.71841 -12.07808 -11.92416 -11.78529 -11.41763 -11.07514 -11.01596 -10.91620 -10.68975 -10.48791 -10.36166 -9.77835 -9.57855 -9.24618 -8.72952 -8.42883 -6.69891 -6.16851 -4.24825 2.61724 3.24659 3.30790 3.36145 3.79697 4.07764 4.33985 4.74348 4.98636 5.14917 5.27003 5.32388 5.38921 5.47793 5.66458 5.74376 5.87601 6.04787 6.15970 6.28202 6.35714 6.60077 6.78205 6.84462 7.04433 7.38213 7.63856 7.83166 8.08813 8.75029 9.38760 10.89039 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.056956 B = 0.007397 C = 0.007352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.493599 B = 3784.447229 C = 3807.480174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.113 3.887 3 H 0.043 0.957 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.068 3.932 7 N -0.890 5.890 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.284 1.284 12 S -0.293 6.293 13 C -0.090 4.090 14 H 0.091 0.909 15 C -0.147 4.147 16 C 0.049 3.951 17 O -0.372 6.372 18 C 0.096 3.904 19 H 0.100 0.900 20 C -0.166 4.166 21 H 0.008 0.992 22 H 0.092 0.908 23 H 0.039 0.961 24 H 0.264 0.736 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 1.396 10.405 10.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.014 4.014 3 H 0.061 0.939 4 C -0.544 4.544 5 H 0.084 0.916 6 C -0.136 4.136 7 N -0.528 5.528 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.210 1.210 12 S -0.063 6.063 13 C -0.219 4.219 14 H 0.110 0.890 15 C -0.187 4.187 16 C -0.029 4.029 17 O -0.291 6.291 18 C 0.037 3.963 19 H 0.118 0.882 20 C -0.224 4.224 21 H 0.027 0.973 22 H 0.111 0.889 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.031 0.475 10.494 10.505 hybrid contribution -0.678 0.859 -1.158 1.593 sum -0.647 1.334 9.336 9.453 Atomic orbital electron populations 1.22047 0.97013 1.00298 1.00384 1.20770 0.94885 0.96750 0.89019 0.93917 1.20694 1.31964 1.12971 0.88774 0.91628 1.24907 0.94782 0.95012 0.98859 1.69871 1.36248 1.22777 1.23920 0.86378 0.78597 0.80102 0.81749 1.20410 1.19634 1.21015 1.86610 1.76618 1.39786 1.03315 1.24440 1.02608 0.97760 0.97135 0.89037 1.23531 1.01761 0.96566 0.96813 1.23522 1.01007 0.85556 0.92809 1.88870 1.58628 1.17831 1.63789 1.22550 0.90261 0.94792 0.88706 0.88195 1.22258 0.97384 1.02228 1.00533 0.97278 0.88939 0.94165 0.92592 0.89105 0.90275 0.92623 0.89101 0.91216 0.91907 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.88 37.16 0.33 -2.94 16 2 C 0.11 2.83 2.72 -27.89 -0.08 2.76 16 3 H 0.04 1.14 8.14 -51.92 -0.42 0.72 16 4 C -0.50 -13.88 8.58 -34.44 -0.30 -14.18 16 5 H 0.07 1.84 7.71 -52.49 -0.40 1.43 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 S -0.29 -6.39 20.09 -107.50 -2.16 -8.55 16 13 C -0.09 -1.57 2.97 -25.20 -0.07 -1.65 16 14 H 0.09 1.58 6.45 -51.93 -0.33 1.25 16 15 C -0.15 -2.35 6.68 -24.72 -0.17 -2.52 16 16 C 0.05 0.66 7.66 38.21 0.29 0.95 16 17 O -0.37 -5.94 11.19 -35.23 -0.39 -6.34 16 18 C 0.10 1.49 3.79 -26.15 -0.10 1.39 16 19 H 0.10 1.65 7.62 -51.93 -0.40 1.25 16 20 C -0.17 -2.12 9.30 37.16 0.35 -1.78 16 21 H 0.01 0.18 6.77 -51.93 -0.35 -0.17 16 22 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.09 1.59 7.83 -51.93 -0.41 1.18 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 LS Contribution 265.18 15.07 4.00 4.00 Total: -1.00 -28.08 265.18 -7.51 -35.59 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.72 Total: -0.51 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 0.16 Total: -16.21 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.63 Total: -24.03 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.39 Total: -6.34 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -6.39 SS G_CDS: -2.16 Total: -8.55 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.08 -7.51 -35.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300336048.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.597 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds