Wall clock time and date at job start Mon Mar 30 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 S 1.81401 * 109.47240 * 119.99460 * 2 1 3 13 13 C 1.81397 * 103.00070 * 295.00594 * 12 2 1 14 14 H 1.08994 * 110.43817 * 52.45065 * 13 12 2 15 15 C 1.54813 * 110.48503 * 289.76245 * 13 12 2 16 16 C 1.54998 * 102.09193 * 220.44178 * 15 13 12 17 17 O 1.44378 * 103.48899 * 37.02848 * 16 15 13 18 18 C 1.43747 * 106.97603 * 319.93467 * 17 16 15 19 19 H 1.08999 * 110.00455 * 146.00832 * 18 17 16 20 20 C 1.53001 * 109.88023 * 267.09386 * 18 17 16 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.09000 * 110.91089 * 338.64443 * 15 13 12 26 26 H 1.09001 * 110.90762 * 102.25323 * 15 13 12 27 27 H 1.09001 * 110.61949 * 278.52503 * 16 15 13 28 28 H 1.09000 * 110.75401 * 155.58914 * 16 15 13 29 29 H 1.08996 * 109.46851 * 177.83526 * 20 18 17 30 30 H 1.08997 * 109.46530 * 297.83031 * 20 18 17 31 31 H 1.08994 * 109.47253 * 57.82722 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 16 2.1347 -0.8550 1.4812 13 6 1.5663 0.2154 2.8309 14 1 0.4972 0.4072 2.7401 15 6 2.3595 1.5449 2.8386 16 6 2.5868 1.7786 4.3539 17 8 2.8094 0.4488 4.8701 18 6 1.8858 -0.4229 4.1966 19 1 2.3379 -1.4039 4.0505 20 6 0.6035 -0.5586 5.0202 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7088 1.1611 -3.4845 25 1 3.3092 1.4344 2.3153 26 1 1.7695 2.3524 2.4049 27 1 1.7031 2.2246 4.8103 28 1 3.4619 2.4066 4.5209 29 1 -0.1065 -1.1896 4.4856 30 1 0.8371 -1.0105 5.9842 31 1 0.1667 0.4275 5.1775 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300336048.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:08 Heat of formation + Delta-G solvation = -80.162533 kcal Electronic energy + Delta-G solvation = -12870.165525 eV Core-core repulsion = 10662.547465 eV Total energy + Delta-G solvation = -2207.618060 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.46654 -36.07642 -33.41437 -32.42945 -32.04660 -27.61557 -27.10727 -23.45046 -22.71227 -22.07942 -18.63717 -17.97065 -17.40143 -16.84189 -16.22903 -15.42589 -15.25453 -14.83683 -14.29919 -13.94130 -13.86113 -13.51852 -13.03402 -12.94061 -12.86556 -12.64890 -12.48242 -12.27926 -12.11640 -11.94817 -11.50165 -11.25834 -10.70180 -10.64825 -10.33717 -8.46377 -8.23031 -6.39245 1.00621 1.40152 1.41006 1.52441 2.01564 2.38354 2.88524 3.05348 3.45616 3.77176 4.04296 4.11068 4.23952 4.35288 4.52178 4.63908 4.65290 4.80569 4.85357 4.86855 4.89190 5.03855 5.09274 5.23274 5.35189 5.59830 5.77302 5.87273 6.06540 6.63304 7.27745 8.81628 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.056956 B = 0.007397 C = 0.007352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.493599 B = 3784.447229 C = 3807.480174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.112 3.888 3 H 0.017 0.983 4 C -0.530 4.530 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.911 5.911 8 Si 0.965 3.035 9 H -0.273 1.273 10 H -0.271 1.271 11 H -0.275 1.275 12 S -0.317 6.317 13 C -0.081 4.081 14 H 0.098 0.902 15 C -0.150 4.150 16 C 0.054 3.946 17 O -0.386 6.386 18 C 0.098 3.902 19 H 0.086 0.914 20 C -0.159 4.159 21 H 0.033 0.967 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.268 0.732 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 1.650 11.434 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 H 0.035 0.965 4 C -0.569 4.569 5 H 0.070 0.930 6 C -0.176 4.176 7 N -0.549 5.549 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.196 1.196 11 H -0.200 1.200 12 S -0.087 6.087 13 C -0.210 4.210 14 H 0.116 0.884 15 C -0.189 4.189 16 C -0.023 4.023 17 O -0.305 6.305 18 C 0.039 3.961 19 H 0.104 0.896 20 C -0.217 4.217 21 H 0.052 0.948 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.312 0.734 11.527 11.555 hybrid contribution -0.546 0.816 -1.401 1.711 sum -0.859 1.550 10.126 10.280 Atomic orbital electron populations 1.21861 0.96108 0.99941 1.00473 1.20536 0.95517 0.95338 0.90176 0.96471 1.20940 1.32493 1.13048 0.90453 0.92960 1.25666 0.94788 0.95637 1.01499 1.69966 1.36647 1.23578 1.24725 0.85442 0.78321 0.78884 0.78383 1.19846 1.19588 1.20019 1.86544 1.77140 1.41099 1.03927 1.24571 1.02866 0.97660 0.95933 0.88423 1.23500 1.00565 0.95954 0.98890 1.23674 1.03211 0.84885 0.90522 1.88859 1.59073 1.18878 1.63718 1.22529 0.91591 0.93994 0.87991 0.89567 1.22206 0.95656 1.03245 1.00598 0.94813 0.91154 0.94570 0.92283 0.91240 0.89589 0.90062 0.87075 0.90890 0.90479 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.88 71.98 0.64 -5.27 16 2 C 0.11 5.71 2.72 29.85 0.08 5.79 16 3 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.53 -29.73 8.58 25.60 0.22 -29.51 16 5 H 0.05 3.00 7.71 -2.91 -0.02 2.98 16 6 C 0.03 1.39 5.30 84.66 0.45 1.83 16 7 N -0.91 -50.86 11.32 21.45 0.24 -50.61 16 8 Si 0.97 43.27 29.54 68.60 2.03 45.29 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 S -0.32 -13.92 20.09 -56.49 -1.13 -15.05 16 13 C -0.08 -2.73 2.97 31.59 0.09 -2.63 16 14 H 0.10 3.18 6.45 -2.39 -0.02 3.16 16 15 C -0.15 -4.59 6.68 31.90 0.21 -4.38 16 16 C 0.05 1.31 7.66 72.67 0.56 1.87 16 17 O -0.39 -11.41 11.19 -148.98 -1.67 -13.07 16 18 C 0.10 2.87 3.79 30.97 0.12 2.99 16 19 H 0.09 2.76 7.62 -2.39 -0.02 2.74 16 20 C -0.16 -3.59 9.30 71.98 0.67 -2.92 16 21 H 0.03 1.38 6.77 -2.39 -0.02 1.37 16 22 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 23 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 24 H 0.27 14.09 8.31 -92.71 -0.77 13.31 16 25 H 0.07 2.43 7.83 -2.39 -0.02 2.41 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.08 1.61 8.11 -2.39 -0.02 1.59 16 28 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 Total: -1.00 -59.94 265.18 3.60 -56.35 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.09 Total: 9.32 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.04 Total: -32.22 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.24 Total: -50.61 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.67 Total: -13.07 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -13.92 SS G_CDS: -1.13 Total: -15.05 kcal Total: -59.94 3.60 -56.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300336048.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.816 kcal (2) G-P(sol) polarization free energy of solvation -59.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds