Wall clock time and date at job start Mon Mar 30 2020 02:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 S 1.81404 * 109.46778 * 120.00072 * 2 1 3 13 13 C 1.81400 * 103.00112 * 295.00146 * 12 2 1 14 14 H 1.09002 * 110.43230 * 307.54659 * 13 12 2 15 15 C 1.54804 * 110.48632 * 70.23291 * 13 12 2 16 16 C 1.54997 * 102.09052 * 139.56032 * 15 13 12 17 17 O 1.44383 * 103.48967 * 322.97563 * 16 15 13 18 18 C 1.43743 * 106.97639 * 40.06242 * 17 16 15 19 19 H 1.08999 * 109.87748 * 92.90937 * 18 17 16 20 20 C 1.53002 * 109.87737 * 214.06514 * 18 17 16 21 21 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 22 22 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 23 23 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 24 24 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 25 25 H 1.08999 * 110.90649 * 257.75435 * 15 13 12 26 26 H 1.09002 * 110.90981 * 21.36340 * 15 13 12 27 27 H 1.09004 * 110.61707 * 204.47884 * 16 15 13 28 28 H 1.09002 * 110.75810 * 81.53891 * 16 15 13 29 29 H 1.09009 * 109.46656 * 177.83075 * 20 18 17 30 30 H 1.08992 * 109.47046 * 297.82554 * 20 18 17 31 31 H 1.08996 * 109.47235 * 57.83227 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1615 -4.4124 10 1 2.4875 -0.1402 -5.1119 11 1 3.6310 -1.7566 -3.7119 12 16 2.1346 -0.8552 1.4812 13 6 1.5663 0.2152 2.8310 14 1 1.8811 1.2444 2.6587 15 6 0.0272 0.1334 2.9760 16 6 -0.1536 0.1200 4.5153 17 8 0.9635 -0.6686 4.9788 18 6 2.1008 -0.2931 4.1840 19 1 2.6571 0.4996 4.6842 20 6 3.0049 -1.5075 3.9631 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7097 1.1618 -3.4844 25 1 -0.4520 1.0078 2.5356 26 1 -0.3572 -0.7845 2.5312 27 1 -1.0969 -0.3539 4.7869 28 1 -0.1032 1.1313 4.9190 29 1 3.8445 -1.2247 3.3281 30 1 3.3790 -1.8614 4.9237 31 1 2.4353 -2.3015 3.4801 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300336049.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:10 Heat of formation + Delta-G solvation = -56.790354 kcal Electronic energy + Delta-G solvation = -12999.682118 eV Core-core repulsion = 10793.077552 eV Total energy + Delta-G solvation = -2206.604566 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.16082 -34.07974 -32.17539 -31.45460 -29.99749 -25.74650 -25.26765 -22.02916 -21.33361 -20.61781 -16.67594 -16.32996 -15.74792 -15.33491 -14.95330 -14.25060 -13.43943 -12.98863 -12.91721 -12.51821 -12.14616 -12.05905 -11.52270 -11.24308 -11.09232 -10.94243 -10.74941 -10.70032 -10.41902 -10.24803 -9.77463 -9.44757 -9.20974 -8.65468 -8.34684 -6.65386 -6.14106 -4.22177 2.62405 3.25292 3.31473 3.36561 3.82423 4.07929 4.35448 4.75280 5.05141 5.17369 5.25993 5.33671 5.41592 5.64680 5.77367 5.80022 5.99280 6.16698 6.25774 6.36345 6.61123 6.66251 6.83910 6.90604 7.08304 7.42006 7.67873 7.86519 8.13156 8.77473 9.41147 10.91486 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.056730 B = 0.008096 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.446204 B = 3457.708959 C = 3805.630670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.098 3.902 3 H 0.039 0.961 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.890 5.890 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 S -0.271 6.271 13 C -0.096 4.096 14 H 0.087 0.913 15 C -0.145 4.145 16 C 0.046 3.954 17 O -0.375 6.375 18 C 0.098 3.902 19 H 0.068 0.932 20 C -0.153 4.153 21 H 0.022 0.978 22 H 0.088 0.912 23 H 0.037 0.963 24 H 0.263 0.737 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 0.029 10.235 10.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 H 0.057 0.943 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.528 5.528 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 S -0.040 6.040 13 C -0.225 4.225 14 H 0.105 0.895 15 C -0.184 4.184 16 C -0.031 4.031 17 O -0.295 6.295 18 C 0.039 3.961 19 H 0.086 0.914 20 C -0.211 4.211 21 H 0.041 0.959 22 H 0.106 0.894 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.303 -0.951 10.323 10.371 hybrid contribution -0.466 1.059 -1.212 1.676 sum -0.768 0.108 9.111 9.144 Atomic orbital electron populations 1.22275 0.97036 1.00253 1.01043 1.20862 0.95173 0.96835 0.90024 0.94318 1.20673 1.31987 1.12684 0.88821 0.91744 1.24911 0.94850 0.95009 0.98844 1.69877 1.36380 1.22735 1.23809 0.86402 0.79413 0.79273 0.81870 1.20459 1.21059 1.19651 1.86675 1.75853 1.39463 1.02039 1.24444 0.98046 1.02216 0.97830 0.89478 1.23715 0.94690 1.04153 0.95867 1.23560 0.90501 0.95383 0.93684 1.88850 1.18941 1.63369 1.58339 1.22506 0.87914 0.97313 0.88335 0.91438 1.21829 0.99923 0.98053 1.01270 0.95937 0.89374 0.94418 0.92673 0.89883 0.88914 0.89178 0.92616 0.89956 0.92579 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.21 37.16 0.31 -3.14 16 2 C 0.10 2.46 2.76 -27.88 -0.08 2.38 16 3 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 4 C -0.50 -13.81 8.58 -34.44 -0.30 -14.10 16 5 H 0.06 1.80 7.71 -52.48 -0.40 1.39 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 S -0.27 -5.75 17.26 -107.50 -1.86 -7.61 16 13 C -0.10 -1.66 3.52 -25.20 -0.09 -1.75 16 14 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 15 C -0.14 -2.28 4.68 -24.73 -0.12 -2.40 16 16 C 0.05 0.63 7.72 38.21 0.29 0.92 16 17 O -0.38 -6.00 11.19 -35.23 -0.39 -6.39 16 18 C 0.10 1.52 4.06 -26.15 -0.11 1.42 16 19 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 20 C -0.15 -2.34 8.29 37.16 0.31 -2.03 16 21 H 0.02 0.45 4.39 -51.93 -0.23 0.22 16 22 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.08 1.26 6.82 -51.93 -0.35 0.90 16 26 H 0.09 1.60 7.31 -51.93 -0.38 1.22 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.28 7.39 -51.92 -0.38 0.89 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.30 7.16 -51.93 -0.37 0.93 16 LS Contribution 255.90 15.07 3.86 3.86 Total: -1.00 -28.12 255.90 -7.19 -35.30 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.53 Total: -0.11 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 0.13 Total: -16.97 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.63 Total: -24.19 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.39 Total: -6.39 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -5.75 SS G_CDS: -1.86 Total: -7.61 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.12 -7.19 -35.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300336049.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.488 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds