Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86795 * 119.99973 * 2 1 4 4 H 1.48500 * 109.47481 * 269.99901 * 3 2 1 5 5 H 1.48504 * 109.47208 * 30.00186 * 3 2 1 6 6 H 1.48505 * 109.47520 * 149.99893 * 3 2 1 7 7 C 1.38946 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00129 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00307 * 180.02562 * 7 2 1 10 10 C 1.34776 * 119.99963 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00201 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99845 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47038 * 180.02562 * 12 10 9 14 14 C 1.48213 * 110.99798 * 175.00424 * 13 12 10 15 15 C 1.54305 * 105.06138 * 144.55464 * 14 13 12 16 16 H 1.09005 * 110.44782 * 118.06741 * 15 14 13 17 17 O 1.42905 * 110.44559 * 240.47758 * 15 14 13 18 18 C 1.54508 * 104.52491 * 359.27021 * 15 14 13 19 19 O 1.44935 * 103.79680 * 336.60199 * 18 15 14 20 20 H 0.97000 * 120.00328 * 0.02562 * 1 2 3 21 21 H 0.96995 * 119.99754 * 359.97438 * 9 7 2 22 22 H 1.09000 * 109.46615 * 60.00569 * 12 10 9 23 23 H 1.09001 * 109.47019 * 300.00574 * 12 10 9 24 24 H 1.08994 * 110.32663 * 25.65146 * 14 13 12 25 25 H 1.09004 * 110.40637 * 263.49105 * 14 13 12 26 26 H 0.96698 * 113.99893 * 178.25927 * 17 15 14 27 27 H 1.09000 * 110.53039 * 95.18602 * 18 15 14 28 28 H 1.08992 * 110.53370 * 217.95340 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 -0.0009 12 6 5.5608 -2.3705 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 7.5271 -3.7966 -0.1211 15 6 7.9667 -4.9960 0.7444 16 1 8.4607 -5.7486 0.1297 17 8 8.8342 -4.5627 1.7942 18 6 6.6503 -5.5555 1.3286 19 8 5.7429 -4.4265 1.2792 20 1 -0.4850 0.8400 -0.0004 21 1 3.8648 -0.3633 0.0004 22 1 5.9240 -1.8567 0.8901 23 1 5.9241 -1.8565 -0.8900 24 1 7.9640 -2.8739 0.2605 25 1 7.8195 -3.9519 -1.1597 26 1 9.1204 -5.2720 2.3858 27 1 6.2768 -6.3744 0.7138 28 1 6.7980 -5.8849 2.3570 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306165075.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = -61.663256 kcal Electronic energy + Delta-G solvation = -14603.208870 eV Core-core repulsion = 11850.099784 eV Total energy + Delta-G solvation = -2753.109086 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.094 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.24154 -38.05048 -35.98986 -33.90562 -32.87202 -31.56353 -30.28095 -27.13635 -24.61322 -22.87982 -21.48690 -19.34787 -18.38456 -17.64400 -16.42305 -16.04658 -15.63300 -15.34425 -14.76235 -13.91002 -13.61924 -13.36850 -13.09418 -12.95840 -12.63956 -12.23024 -11.90616 -11.69013 -11.64197 -11.10882 -10.69633 -10.54727 -9.97576 -9.90899 -9.49088 -8.67810 -8.28786 -8.10351 -6.24178 -3.75244 2.99580 3.07698 3.11079 3.19236 3.74064 3.84239 4.15797 4.22644 4.51892 4.65991 4.84308 5.15113 5.28095 5.36242 5.44061 5.55612 5.61844 5.68241 5.77689 5.91508 6.52506 6.73469 7.32821 7.64415 8.20822 8.67683 9.02724 9.49278 9.91602 10.89266 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.060912 B = 0.006718 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.572530 B = 4167.093816 C = 4436.022730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.040 3.960 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.120 0.880 9 N -0.595 5.595 10 C 0.459 3.541 11 O -0.546 6.546 12 C 0.015 3.985 13 N -0.303 5.303 14 C -0.001 4.001 15 C 0.073 3.927 16 H 0.079 0.921 17 O -0.562 6.562 18 C 0.013 3.987 19 O -0.222 6.222 20 H 0.272 0.728 21 H 0.369 0.631 22 H 0.069 0.931 23 H 0.110 0.890 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.381 0.619 27 H 0.075 0.925 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.108 -5.364 0.889 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.430 4.430 8 H 0.137 0.863 9 N -0.236 5.236 10 C 0.244 3.756 11 O -0.425 6.425 12 C -0.118 4.118 13 N -0.070 5.070 14 C -0.129 4.129 15 C 0.013 3.987 16 H 0.097 0.903 17 O -0.369 6.369 18 C -0.066 4.066 19 O -0.227 6.227 20 H 0.083 0.917 21 H 0.202 0.798 22 H 0.087 0.913 23 H 0.128 0.872 24 H 0.089 0.911 25 H 0.129 0.871 26 H 0.229 0.771 27 H 0.094 0.906 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.941 -5.591 0.340 17.843 hybrid contribution 1.258 1.325 0.849 2.014 sum 18.198 -4.266 1.189 18.729 Atomic orbital electron populations 1.69621 1.05604 1.27365 1.49890 1.25014 0.95482 0.97890 0.97857 0.86670 0.79780 0.84111 0.78809 1.19651 1.20247 1.19560 1.19426 0.79162 0.96643 1.47764 0.86285 1.42164 1.07503 1.05926 1.68007 1.19341 0.87454 0.84740 0.84058 1.90592 1.68922 1.30783 1.52224 1.22429 0.97381 0.89020 1.02931 1.71138 1.08164 1.15441 1.12238 1.23736 0.89672 0.98714 1.00816 1.23383 0.90807 0.95759 0.88744 0.90346 1.86554 1.67201 1.39524 1.43579 1.24189 0.89300 0.91365 1.01724 1.92120 1.57051 1.39718 1.33800 0.91704 0.79804 0.91280 0.87192 0.91099 0.87113 0.77116 0.90636 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.45 13.96 55.50 0.77 -25.67 15 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 15 3 Si 0.88 19.85 27.74 -169.99 -4.71 15.13 15 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.27 -5.58 6.52 56.52 0.37 -5.22 15 7 C -0.30 -8.82 10.16 -14.93 -0.15 -8.97 15 8 H 0.12 3.97 7.39 -52.49 -0.39 3.59 15 9 N -0.60 -14.82 5.09 -10.96 -0.06 -14.88 15 10 C 0.46 11.17 7.71 -10.98 -0.08 11.09 15 11 O -0.55 -15.76 15.49 -4.94 -0.08 -15.83 15 12 C 0.01 0.27 5.51 -4.97 -0.03 0.24 15 13 N -0.30 -5.37 5.40 -113.30 -0.61 -5.98 15 14 C 0.00 -0.01 6.80 -2.42 -0.02 -0.03 15 15 C 0.07 0.79 4.46 -25.26 -0.11 0.67 15 16 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 17 O -0.56 -5.89 13.28 -35.23 -0.47 -6.35 15 18 C 0.01 0.17 7.68 37.95 0.29 0.46 15 19 O -0.22 -4.29 11.36 -25.25 -0.29 -4.58 15 20 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 21 H 0.37 8.00 5.76 -40.82 -0.24 7.77 15 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.11 1.59 8.13 -51.93 -0.42 1.17 15 24 H 0.07 0.89 7.63 -51.93 -0.40 0.49 15 25 H 0.11 1.12 8.14 -51.93 -0.42 0.69 15 26 H 0.38 2.11 9.12 45.56 0.42 2.53 15 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 28 H 0.10 1.00 8.08 -51.93 -0.42 0.58 15 LS Contribution 247.86 15.07 3.74 3.74 Total: -1.00 -36.92 247.86 -4.21 -41.12 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.30 Total: 8.80 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -0.20 Total: 4.50 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.11 Total: -46.53 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.83 Total: -26.76 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.71 Total: 15.13 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -36.92 -4.21 -41.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306165075.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.539 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds