Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86795 * 119.99973 * 2 1 4 4 H 1.48500 * 109.47481 * 269.99901 * 3 2 1 5 5 H 1.48504 * 109.47208 * 30.00186 * 3 2 1 6 6 H 1.48505 * 109.47520 * 149.99893 * 3 2 1 7 7 C 1.38946 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00129 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00307 * 180.02562 * 7 2 1 10 10 C 1.34776 * 119.99963 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00201 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99845 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47038 * 180.02562 * 12 10 9 14 14 C 1.48213 * 110.99798 * 175.00424 * 13 12 10 15 15 C 1.54305 * 105.06138 * 144.55464 * 14 13 12 16 16 H 1.09005 * 110.44782 * 118.06741 * 15 14 13 17 17 O 1.42905 * 110.44559 * 240.47758 * 15 14 13 18 18 C 1.54508 * 104.52491 * 359.27021 * 15 14 13 19 19 O 1.44935 * 103.79680 * 336.60199 * 18 15 14 20 20 H 0.97000 * 120.00328 * 0.02562 * 1 2 3 21 21 H 0.96995 * 119.99754 * 359.97438 * 9 7 2 22 22 H 1.09000 * 109.46615 * 60.00569 * 12 10 9 23 23 H 1.09001 * 109.47019 * 300.00574 * 12 10 9 24 24 H 1.08994 * 110.32663 * 25.65146 * 14 13 12 25 25 H 1.09004 * 110.40637 * 263.49105 * 14 13 12 26 26 H 0.96698 * 113.99893 * 178.25927 * 17 15 14 27 27 H 1.09000 * 110.53039 * 95.18602 * 18 15 14 28 28 H 1.08992 * 110.53370 * 217.95340 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 -0.0009 12 6 5.5608 -2.3705 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 7.5271 -3.7966 -0.1211 15 6 7.9667 -4.9960 0.7444 16 1 8.4607 -5.7486 0.1297 17 8 8.8342 -4.5627 1.7942 18 6 6.6503 -5.5555 1.3286 19 8 5.7429 -4.4265 1.2792 20 1 -0.4850 0.8400 -0.0004 21 1 3.8648 -0.3633 0.0004 22 1 5.9240 -1.8567 0.8901 23 1 5.9241 -1.8565 -0.8900 24 1 7.9640 -2.8739 0.2605 25 1 7.8195 -3.9519 -1.1597 26 1 9.1204 -5.2720 2.3858 27 1 6.2768 -6.3744 0.7138 28 1 6.7980 -5.8849 2.3570 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306165075.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = -95.489929 kcal Electronic energy + Delta-G solvation = -14604.675704 eV Core-core repulsion = 11850.099784 eV Total energy + Delta-G solvation = -2754.575920 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53725 -39.69798 -36.95569 -35.98077 -34.22777 -33.67758 -31.33270 -28.60072 -26.35125 -24.21826 -22.41969 -21.32058 -20.33133 -18.51738 -17.80845 -17.50676 -16.91855 -16.74436 -16.41960 -15.50805 -15.28483 -14.63893 -14.55582 -14.23733 -14.14340 -13.81584 -13.29313 -13.09243 -12.79825 -12.64088 -12.41876 -11.97690 -11.59055 -11.50612 -10.88880 -10.44712 -10.24492 -9.73224 -8.40905 -6.02148 1.30481 1.36143 1.45003 1.79319 1.98293 2.23681 2.65532 3.12583 3.15105 3.51950 3.65556 3.90647 4.04109 4.20516 4.30145 4.43780 4.55287 4.61175 4.68536 4.86280 5.29835 5.54255 5.65639 5.94251 6.59263 6.80003 6.88071 7.38483 7.97118 8.77103 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.060912 B = 0.006718 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.572530 B = 4167.093816 C = 4436.022730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.968 3.032 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.234 1.234 7 C -0.329 4.329 8 H 0.053 0.947 9 N -0.592 5.592 10 C 0.454 3.546 11 O -0.602 6.602 12 C 0.027 3.973 13 N -0.327 5.327 14 C -0.004 4.004 15 C 0.085 3.915 16 H 0.115 0.885 17 O -0.577 6.577 18 C 0.002 3.998 19 O -0.277 6.277 20 H 0.280 0.720 21 H 0.390 0.610 22 H 0.087 0.913 23 H 0.154 0.846 24 H 0.076 0.924 25 H 0.140 0.860 26 H 0.402 0.598 27 H 0.075 0.925 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.697 -3.755 0.604 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.787 3.213 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.157 1.157 7 C -0.458 4.458 8 H 0.071 0.929 9 N -0.235 5.235 10 C 0.241 3.759 11 O -0.485 6.485 12 C -0.105 4.105 13 N -0.095 5.095 14 C -0.132 4.132 15 C 0.025 3.975 16 H 0.132 0.868 17 O -0.387 6.387 18 C -0.076 4.076 19 O -0.281 6.281 20 H 0.089 0.911 21 H 0.226 0.774 22 H 0.105 0.895 23 H 0.172 0.828 24 H 0.094 0.906 25 H 0.158 0.842 26 H 0.253 0.747 27 H 0.094 0.906 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 20.573 -4.009 0.076 20.960 hybrid contribution 0.106 0.662 0.957 1.169 sum 20.678 -3.347 1.033 20.973 Atomic orbital electron populations 1.69807 1.08164 1.29287 1.50384 1.26136 0.96509 1.02765 0.96009 0.85327 0.79327 0.76478 0.80123 1.17686 1.19960 1.15719 1.18996 0.81417 0.94961 1.50472 0.92930 1.41974 1.05834 1.07343 1.68350 1.20622 0.90384 0.83503 0.81370 1.90560 1.71027 1.32843 1.54048 1.22382 0.91812 0.90528 1.05781 1.71019 1.11707 1.14806 1.11971 1.23957 0.86349 0.99879 1.02992 1.23331 0.89836 0.95492 0.88821 0.86772 1.86502 1.66829 1.41199 1.44122 1.24512 0.89876 0.89997 1.03245 1.92067 1.59492 1.41847 1.34720 0.91097 0.77426 0.89471 0.82819 0.90591 0.84228 0.74710 0.90645 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.96 21.66 0.30 -57.49 15 2 C -0.02 -0.91 5.50 84.93 0.47 -0.44 15 3 Si 0.97 39.73 27.74 68.60 1.90 41.63 15 4 H -0.25 -9.68 7.11 99.48 0.71 -8.97 15 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 6 H -0.23 -8.17 6.52 99.48 0.65 -7.52 15 7 C -0.33 -20.10 10.16 84.04 0.85 -19.25 15 8 H 0.05 3.82 7.39 -2.91 -0.02 3.80 15 9 N -0.59 -29.46 5.09 -306.98 -1.56 -31.02 15 10 C 0.45 22.26 7.71 87.66 0.68 22.93 15 11 O -0.60 -36.42 15.49 6.97 0.11 -36.31 15 12 C 0.03 0.91 5.51 85.56 0.47 1.38 15 13 N -0.33 -11.02 5.40 -512.38 -2.77 -13.79 15 14 C 0.00 -0.09 6.80 86.49 0.59 0.50 15 15 C 0.09 1.55 4.46 31.55 0.14 1.69 15 16 H 0.11 1.30 8.14 -2.38 -0.02 1.28 15 17 O -0.58 -10.10 13.28 -148.98 -1.98 -12.08 15 18 C 0.00 0.05 7.68 72.49 0.56 0.60 15 19 O -0.28 -10.66 11.36 -44.00 -0.50 -11.16 15 20 H 0.28 15.70 8.31 -92.71 -0.77 14.93 15 21 H 0.39 15.88 5.76 -92.71 -0.53 15.35 15 22 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 23 H 0.15 3.79 8.13 -2.39 -0.02 3.77 15 24 H 0.08 1.59 7.63 -2.39 -0.02 1.57 15 25 H 0.14 2.19 8.14 -2.39 -0.02 2.17 15 26 H 0.40 3.11 9.12 -74.06 -0.68 2.44 15 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 28 H 0.11 2.23 8.08 -2.39 -0.02 2.21 15 Total: -1.00 -86.98 247.86 -0.81 -87.79 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.07 Total: 25.00 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 3.75 Total: 7.42 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -4.03 Total: -102.29 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -2.37 Total: -59.55 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.90 Total: 41.63 kcal Total: -86.98 -0.81 -87.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306165075.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.699 kcal (2) G-P(sol) polarization free energy of solvation -86.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds