Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00268 * 2 1 4 4 H 1.48495 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47205 * 300.00515 * 3 2 1 6 6 H 1.48507 * 109.46630 * 60.00249 * 3 2 1 7 7 C 1.37875 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00152 * 359.97438 * 7 2 1 10 10 H 1.08993 * 110.39339 * 60.98173 * 9 7 2 11 11 C 1.55739 * 110.44112 * 298.55045 * 9 7 2 12 12 H 1.09004 * 110.18201 * 115.84100 * 11 9 7 13 13 O 1.42898 * 110.24630 * 354.04609 * 11 9 7 14 14 C 1.56087 * 105.81973 * 234.92696 * 11 9 7 15 15 H 1.08997 * 110.86038 * 216.63781 * 14 11 9 16 16 O 1.42903 * 110.86258 * 92.98182 * 14 11 9 17 17 C 1.51835 * 102.18205 * 334.81019 * 14 11 9 18 18 H 1.08998 * 111.03919 * 287.52711 * 17 14 11 19 19 O 1.41337 * 123.28989 * 151.36889 * 17 14 11 20 20 C 1.45962 * 102.15176 * 208.23490 * 19 17 14 21 21 O 1.45641 * 107.92467 * 26.11561 * 20 19 17 22 22 C 1.39501 * 104.35950 * 7.66144 * 21 20 19 23 23 H 1.09009 * 108.50405 * 77.17498 * 22 21 20 24 24 H 0.97000 * 119.99612 * 359.97438 * 1 2 3 25 25 H 0.96707 * 114.00066 * 182.11516 * 13 11 9 26 26 H 0.96696 * 113.99562 * 61.45185 * 16 14 11 27 27 H 1.09005 * 109.77399 * 266.49913 * 20 19 17 28 28 H 1.09001 * 109.79164 * 145.74316 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6315 -2.5801 -0.8937 11 6 0.3755 -2.6218 1.2816 12 1 -0.6811 -2.6459 1.0147 13 8 0.6355 -1.5285 2.1643 14 6 0.7918 -3.9674 1.9541 15 1 -0.0709 -4.4610 2.4015 16 8 1.8185 -3.7549 2.9251 17 6 1.3197 -4.7650 0.7749 18 1 0.5060 -5.0893 0.1261 19 8 2.3134 -5.7628 0.8957 20 6 2.9510 -5.7220 -0.4166 21 8 2.7635 -4.3857 -0.9647 22 6 2.2026 -3.6571 0.0844 23 1 2.9927 -3.4049 0.7918 24 1 -0.4849 0.8401 0.0004 25 1 0.1424 -1.5680 2.9953 26 1 1.5564 -3.1764 3.6543 27 1 2.4890 -6.4585 -1.0741 28 1 4.0156 -5.9336 -0.3164 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306454831.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = -148.703392 kcal Electronic energy + Delta-G solvation = -15791.408941 eV Core-core repulsion = 13002.232761 eV Total energy + Delta-G solvation = -2789.176180 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.73100 -37.51434 -35.02399 -34.40026 -33.20835 -31.78336 -27.70216 -26.16250 -23.96082 -23.63026 -20.66892 -19.57546 -18.04604 -16.50758 -16.42662 -15.74771 -15.30580 -14.98928 -14.92660 -14.21836 -13.43897 -13.22010 -12.58420 -12.38876 -12.30582 -11.82363 -11.25272 -10.88129 -10.84419 -10.70021 -10.25681 -9.99370 -9.82753 -9.14358 -9.03322 -8.85234 -8.44505 -8.26340 -5.94576 -3.92790 3.37483 3.44470 3.50461 3.54610 4.45650 4.54013 4.65003 5.13017 5.21669 5.37539 5.48108 5.51317 5.62458 5.70989 5.83354 6.06238 6.21751 6.34094 6.65937 6.86593 6.90529 7.40270 7.72748 8.01009 8.08013 8.26404 8.80377 9.05708 9.70902 11.17901 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.039124 B = 0.012105 C = 0.010447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.505692 B = 2312.541704 C = 2679.589167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.084 3.916 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.498 4.498 8 H 0.056 0.944 9 C 0.073 3.927 10 H 0.044 0.956 11 C 0.106 3.894 12 H 0.055 0.945 13 O -0.494 6.494 14 C 0.077 3.923 15 H 0.055 0.945 16 O -0.541 6.541 17 C 0.012 3.988 18 H 0.089 0.911 19 O -0.365 6.365 20 C 0.198 3.802 21 O -0.370 6.370 22 C 0.059 3.941 23 H 0.070 0.930 24 H 0.256 0.744 25 H 0.334 0.666 26 H 0.373 0.627 27 H 0.075 0.925 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -7.473 3.299 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.118 4.118 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.055 3.945 10 H 0.062 0.938 11 C 0.044 3.956 12 H 0.073 0.927 13 O -0.293 6.293 14 C 0.017 3.983 15 H 0.072 0.928 16 O -0.346 6.346 17 C -0.046 4.046 18 H 0.107 0.893 19 O -0.285 6.285 20 C 0.085 3.915 21 O -0.290 6.290 22 C 0.000 4.000 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.176 0.824 26 H 0.221 0.779 27 H 0.092 0.908 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.046 -7.629 2.368 7.988 hybrid contribution -0.396 0.913 0.876 1.326 sum -0.351 -6.716 3.243 7.466 Atomic orbital electron populations 1.69897 1.05957 1.26106 1.49963 1.24734 0.94639 0.98623 0.93839 0.86530 0.80217 0.83913 0.77155 1.19978 1.21425 1.21160 1.20694 0.92454 0.89196 1.51257 0.92610 1.18699 0.91727 0.91504 0.92586 0.93799 1.23587 0.97996 0.82079 0.91895 0.92744 1.87161 1.68103 1.44926 1.29151 1.23146 0.89745 0.96863 0.88514 0.92757 1.86543 1.39713 1.71113 1.37260 1.24017 0.93536 0.88642 0.98408 0.89338 1.88988 1.48810 1.57639 1.33014 1.25375 0.98119 0.86087 0.81947 1.88380 1.82836 1.21055 1.36741 1.23389 0.96004 0.93817 0.86753 0.91169 0.93431 0.82402 0.77939 0.90763 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.72 11.90 55.43 0.66 -24.06 15 2 C 0.08 2.35 4.47 -17.82 -0.08 2.27 15 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 15 7 C -0.50 -14.00 7.77 -34.44 -0.27 -14.27 15 8 H 0.06 1.62 7.75 -52.48 -0.41 1.22 15 9 C 0.07 1.84 2.72 -91.74 -0.25 1.59 15 10 H 0.04 1.17 8.14 -51.93 -0.42 0.75 15 11 C 0.11 2.27 3.57 -23.62 -0.08 2.18 15 12 H 0.05 1.16 8.14 -51.93 -0.42 0.74 15 13 O -0.49 -10.84 9.45 -54.46 -0.51 -11.36 15 14 C 0.08 1.44 4.22 -25.67 -0.11 1.33 15 15 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 16 O -0.54 -10.24 12.41 -58.33 -0.72 -10.96 15 17 C 0.01 0.25 3.68 -24.81 -0.09 0.15 15 18 H 0.09 1.60 8.14 -51.93 -0.42 1.18 15 19 O -0.36 -7.14 11.66 -61.40 -0.72 -7.85 15 20 C 0.20 3.41 8.57 101.05 0.87 4.28 15 21 O -0.37 -8.00 11.59 -55.12 -0.64 -8.64 15 22 C 0.06 1.35 3.07 -25.65 -0.08 1.27 15 23 H 0.07 1.79 7.27 -51.92 -0.38 1.41 15 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 25 H 0.33 5.46 8.82 45.56 0.40 5.86 15 26 H 0.37 5.47 8.17 45.56 0.37 5.84 15 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 235.12 15.07 3.54 3.54 Total: -1.00 -32.44 235.12 -5.19 -37.63 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -1.68 Total: 6.00 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.09 Total: -1.20 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.66 Total: -24.06 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -2.59 Total: -38.82 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.44 -5.19 -37.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306454831.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.077 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds