Wall clock time and date at job start Mon Mar 30 2020 02:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30484 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48502 * 109.47271 * 270.00288 * 3 2 1 5 5 H 1.48505 * 109.46880 * 29.99768 * 3 2 1 6 6 H 1.48495 * 109.47179 * 149.99739 * 3 2 1 7 7 C 1.40435 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.41400 * 119.99804 * 0.02562 * 7 2 1 10 10 O 1.22009 * 120.00026 * 0.27294 * 9 7 2 11 11 C 1.46876 * 120.00099 * 179.97438 * 9 7 2 12 12 C 1.37849 * 125.56194 * 179.71899 * 11 9 7 13 13 C 1.41095 * 107.40090 * 179.84746 * 12 11 9 14 14 C 1.40425 * 133.58995 * 180.10611 * 13 12 11 15 15 C 1.36996 * 118.18496 * 180.33480 * 14 13 12 16 16 C 1.38772 * 119.64489 * 359.97438 * 15 14 13 17 17 N 1.31689 * 121.61750 * 359.97438 * 16 15 14 18 18 C 1.32637 * 121.59930 * 0.03552 * 17 16 15 19 19 N 1.37443 * 132.75083 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.48645 * 359.95477 * 19 18 17 21 21 H 0.97000 * 119.99838 * 0.02562 * 1 2 3 22 22 H 1.08002 * 126.29971 * 359.97438 * 12 11 9 23 23 H 1.07998 * 120.90512 * 0.35669 * 14 13 12 24 24 H 1.08008 * 120.17407 * 180.02562 * 15 14 13 25 25 H 1.07995 * 119.19603 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2389 1.6178 0.0000 4 1 2.4863 2.0465 -1.4001 5 1 1.4362 2.6527 0.7000 6 1 3.5363 1.4402 0.7001 7 6 2.0071 -1.2162 0.0005 8 1 3.0871 -1.2161 0.0010 9 6 1.3001 -2.4407 0.0005 10 8 0.0801 -2.4408 -0.0050 11 6 2.0345 -3.7127 0.0005 12 6 1.4643 -4.9677 0.0060 13 6 2.5155 -5.9088 0.0003 14 6 2.5584 -7.3124 0.0000 15 6 3.7851 -7.9223 0.0004 16 6 4.9366 -7.1479 0.0005 17 7 4.8837 -5.8320 -0.0003 18 6 3.7270 -5.1830 -0.0005 19 7 3.4071 -3.8463 -0.0008 20 1 4.0443 -3.1149 -0.0002 21 1 -0.4850 0.8401 -0.0004 22 1 0.4073 -5.1897 0.0115 23 1 1.6491 -7.8952 -0.0008 24 1 3.8556 -9.0001 -0.0002 25 1 5.8999 -7.6362 0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306486292.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:08 Heat of formation + Delta-G solvation = 20.035167 kcal Electronic energy + Delta-G solvation = -13292.550893 eV Core-core repulsion = 10850.293436 eV Total energy + Delta-G solvation = -2442.257457 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96546 -37.64528 -36.12778 -32.95933 -32.56346 -29.83199 -28.57258 -27.12128 -23.69919 -22.18590 -21.02204 -19.40117 -17.66388 -17.06808 -15.80462 -15.49408 -14.92559 -14.55282 -14.09220 -13.13644 -13.08917 -12.66938 -12.44720 -12.40666 -11.91424 -11.46651 -11.36793 -11.00311 -10.70244 -10.50863 -10.07038 -9.17206 -9.02662 -8.01632 -7.83562 -7.27302 -6.56333 -5.18413 1.29884 1.82353 2.85421 3.01717 3.04498 3.08833 3.37446 3.84265 4.28239 4.33206 4.95664 5.12653 5.37729 5.44554 5.50350 5.60671 6.04384 6.10276 6.30283 6.39266 6.70771 6.96208 6.98303 7.07348 7.51250 7.69930 7.90020 8.42210 8.53284 8.57819 10.03837 10.24701 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.057862 B = 0.007398 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.792008 B = 3783.967515 C = 4257.914763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.513 4.513 8 H 0.070 0.930 9 C 0.403 3.597 10 O -0.524 6.524 11 C 0.090 3.910 12 C -0.190 4.190 13 C -0.139 4.139 14 C -0.040 4.040 15 C -0.208 4.208 16 C 0.116 3.884 17 N -0.495 5.495 18 C 0.259 3.741 19 N -0.551 5.551 20 H 0.422 0.578 21 H 0.279 0.721 22 H 0.147 0.853 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.492 -7.512 0.014 9.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.544 4.544 8 H 0.088 0.912 9 C 0.298 3.702 10 O -0.412 6.412 11 C -0.021 4.021 12 C -0.214 4.214 13 C -0.147 4.147 14 C -0.066 4.066 15 C -0.230 4.230 16 C -0.052 4.052 17 N -0.208 5.208 18 C 0.024 3.976 19 N -0.157 5.157 20 H 0.261 0.739 21 H 0.090 0.910 22 H 0.165 0.835 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.497 -6.745 0.014 9.365 hybrid contribution 0.208 0.511 -0.006 0.552 sum 6.705 -6.233 0.008 9.155 Atomic orbital electron populations 1.69905 1.07621 1.28766 1.28917 1.25996 0.94751 1.01191 0.92639 0.86272 0.80397 0.80390 0.79416 1.19160 1.19845 1.18412 1.20804 0.94651 0.91708 1.47246 0.91168 1.17354 0.88325 0.83983 0.80557 1.90636 1.13816 1.87088 1.49615 1.23432 0.80408 0.99545 0.98731 1.21137 0.98405 0.89787 1.12062 1.18971 0.94573 0.93926 1.07231 1.20780 0.98017 0.92173 0.95677 1.21421 0.93367 1.00622 1.07554 1.22295 0.98219 0.87424 0.97261 1.66447 1.27362 1.10540 1.16479 1.18638 0.90078 0.85517 1.03328 1.42029 1.07567 1.04445 1.61669 0.73941 0.90952 0.83493 0.85409 0.85396 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.85 11.72 55.57 0.65 -19.20 15 2 C 0.08 2.03 5.50 -17.30 -0.10 1.93 15 3 Si 0.91 18.31 29.56 -169.99 -5.03 13.28 15 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 6 H -0.26 -5.08 7.11 56.52 0.40 -4.67 15 7 C -0.51 -13.40 9.11 -37.55 -0.34 -13.74 15 8 H 0.07 1.64 6.90 -52.49 -0.36 1.27 15 9 C 0.40 11.03 6.90 -34.89 -0.24 10.79 15 10 O -0.52 -16.13 15.40 4.91 0.08 -16.05 15 11 C 0.09 2.13 6.93 -81.78 -0.57 1.57 15 12 C -0.19 -4.14 10.64 -38.64 -0.41 -4.55 15 13 C -0.14 -2.74 6.17 -106.86 -0.66 -3.40 15 14 C -0.04 -0.63 10.19 -39.21 -0.40 -1.03 15 15 C -0.21 -2.82 10.04 -39.83 -0.40 -3.22 15 16 C 0.12 1.70 11.15 -17.42 -0.19 1.51 15 17 N -0.50 -9.08 10.39 -12.11 -0.13 -9.20 15 18 C 0.26 5.22 8.40 -155.52 -1.31 3.91 15 19 N -0.55 -11.47 6.03 -8.42 -0.05 -11.52 15 20 H 0.42 7.92 7.99 -40.82 -0.33 7.59 15 21 H 0.28 6.80 8.29 -40.82 -0.34 6.47 15 22 H 0.15 3.10 8.06 -52.49 -0.42 2.67 15 23 H 0.13 1.65 8.06 -52.49 -0.42 1.23 15 24 H 0.13 1.26 8.06 -52.48 -0.42 0.84 15 25 H 0.15 1.63 8.06 -52.49 -0.42 1.21 15 LS Contribution 234.88 15.07 3.54 3.54 Total: -1.00 -31.52 234.88 -7.06 -38.59 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -1.51 Total: 6.80 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -4.62 Total: -6.24 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.47 Total: -39.92 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.08 Total: -16.05 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.52 -7.06 -38.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306486292.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.625 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds