Wall clock time and date at job start Mon Mar 30 2020 02:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30484 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48502 * 109.47271 * 270.00288 * 3 2 1 5 5 H 1.48505 * 109.46880 * 29.99768 * 3 2 1 6 6 H 1.48495 * 109.47179 * 149.99739 * 3 2 1 7 7 C 1.40435 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.41400 * 119.99804 * 0.02562 * 7 2 1 10 10 O 1.22009 * 120.00026 * 0.27294 * 9 7 2 11 11 C 1.46876 * 120.00099 * 179.97438 * 9 7 2 12 12 C 1.37849 * 125.56194 * 179.71899 * 11 9 7 13 13 C 1.41095 * 107.40090 * 179.84746 * 12 11 9 14 14 C 1.40425 * 133.58995 * 180.10611 * 13 12 11 15 15 C 1.36996 * 118.18496 * 180.33480 * 14 13 12 16 16 C 1.38772 * 119.64489 * 359.97438 * 15 14 13 17 17 N 1.31689 * 121.61750 * 359.97438 * 16 15 14 18 18 C 1.32637 * 121.59930 * 0.03552 * 17 16 15 19 19 N 1.37443 * 132.75083 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.48645 * 359.95477 * 19 18 17 21 21 H 0.97000 * 119.99838 * 0.02562 * 1 2 3 22 22 H 1.08002 * 126.29971 * 359.97438 * 12 11 9 23 23 H 1.07998 * 120.90512 * 0.35669 * 14 13 12 24 24 H 1.08008 * 120.17407 * 180.02562 * 15 14 13 25 25 H 1.07995 * 119.19603 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2389 1.6178 0.0000 4 1 2.4863 2.0465 -1.4001 5 1 1.4362 2.6527 0.7000 6 1 3.5363 1.4402 0.7001 7 6 2.0071 -1.2162 0.0005 8 1 3.0871 -1.2161 0.0010 9 6 1.3001 -2.4407 0.0005 10 8 0.0801 -2.4408 -0.0050 11 6 2.0345 -3.7127 0.0005 12 6 1.4643 -4.9677 0.0060 13 6 2.5155 -5.9088 0.0003 14 6 2.5584 -7.3124 0.0000 15 6 3.7851 -7.9223 0.0004 16 6 4.9366 -7.1479 0.0005 17 7 4.8837 -5.8320 -0.0003 18 6 3.7270 -5.1830 -0.0005 19 7 3.4071 -3.8463 -0.0008 20 1 4.0443 -3.1149 -0.0002 21 1 -0.4850 0.8401 -0.0004 22 1 0.4073 -5.1897 0.0115 23 1 1.6491 -7.8952 -0.0008 24 1 3.8556 -9.0001 -0.0002 25 1 5.8999 -7.6362 0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306486292.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:07 Heat of formation + Delta-G solvation = -1.172343 kcal Electronic energy + Delta-G solvation = -13293.470519 eV Core-core repulsion = 10850.293436 eV Total energy + Delta-G solvation = -2443.177083 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.44045 -39.27654 -37.93584 -34.93565 -33.95865 -31.28866 -30.24575 -28.94083 -25.29416 -23.57549 -22.61014 -21.12693 -19.21736 -18.82396 -17.64431 -16.76230 -16.42052 -16.06712 -15.60620 -15.05661 -14.68686 -14.33077 -14.04475 -13.86942 -13.41825 -13.02196 -12.94531 -12.67827 -12.64559 -12.09065 -11.45853 -11.08062 -10.33606 -9.90612 -9.38955 -8.90486 -8.50342 -7.25195 -0.12462 0.53806 1.20176 1.35839 1.49653 1.53180 1.87350 2.14885 2.39751 3.00430 3.49639 3.65400 3.85077 3.97433 4.18509 4.33542 4.53056 4.76606 4.87923 4.98752 5.06124 5.39835 5.53317 5.62093 5.73882 6.01508 6.40921 6.53360 6.60431 7.10332 8.03824 8.33170 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.057862 B = 0.007398 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.792008 B = 3783.967515 C = 4257.914763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.025 3.975 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.247 1.247 7 C -0.536 4.536 8 H 0.091 0.909 9 C 0.384 3.616 10 O -0.579 6.579 11 C 0.045 3.955 12 C -0.184 4.184 13 C -0.170 4.170 14 C -0.038 4.038 15 C -0.191 4.191 16 C 0.132 3.868 17 N -0.521 5.521 18 C 0.244 3.756 19 N -0.549 5.549 20 H 0.425 0.575 21 H 0.288 0.712 22 H 0.142 0.858 23 H 0.156 0.844 24 H 0.180 0.820 25 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.112 -9.266 0.024 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.195 4.195 3 Si 0.817 3.183 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.171 1.171 7 C -0.566 4.566 8 H 0.109 0.891 9 C 0.283 3.717 10 O -0.472 6.472 11 C -0.066 4.066 12 C -0.210 4.210 13 C -0.177 4.177 14 C -0.064 4.064 15 C -0.211 4.211 16 C -0.037 4.037 17 N -0.235 5.235 18 C 0.012 3.988 19 N -0.155 5.155 20 H 0.264 0.736 21 H 0.099 0.901 22 H 0.159 0.841 23 H 0.174 0.826 24 H 0.198 0.802 25 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 9.138 -8.507 0.024 12.485 hybrid contribution -0.488 0.733 -0.010 0.880 sum 8.650 -7.774 0.014 11.630 Atomic orbital electron populations 1.70034 1.09949 1.30556 1.29683 1.27262 0.95588 1.05522 0.91177 0.84978 0.78977 0.74365 0.79935 1.18141 1.18897 1.17052 1.21300 0.95865 0.92210 1.47213 0.89105 1.17852 0.88074 0.86084 0.79692 1.90569 1.15800 1.88419 1.52418 1.22682 0.81830 0.98580 1.03485 1.21246 0.98816 0.90281 1.10627 1.19176 0.93343 0.95725 1.09475 1.21259 1.00550 0.90459 0.94143 1.21994 0.91679 1.03112 1.04358 1.23321 1.00900 0.86314 0.93120 1.66585 1.26358 1.12378 1.18221 1.18853 0.91128 0.85087 1.03723 1.41803 1.06446 1.05346 1.61874 0.73584 0.90099 0.84068 0.82598 0.80248 0.78409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.30 11.72 21.90 0.26 -44.04 15 2 C 0.03 1.33 5.50 85.43 0.47 1.80 15 3 Si 1.00 37.74 29.56 68.60 2.03 39.77 15 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 5 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 6 H -0.25 -8.74 7.11 99.48 0.71 -8.03 15 7 C -0.54 -29.14 9.11 23.58 0.21 -28.92 15 8 H 0.09 4.35 6.90 -2.91 -0.02 4.33 15 9 C 0.38 22.40 6.90 25.31 0.17 22.57 15 10 O -0.58 -38.32 15.40 -5.34 -0.08 -38.40 15 11 C 0.05 2.26 6.93 40.36 0.28 2.54 15 12 C -0.18 -8.41 10.64 22.88 0.24 -8.17 15 13 C -0.17 -6.59 6.17 -21.31 -0.13 -6.72 15 14 C -0.04 -1.06 10.19 22.51 0.23 -0.83 15 15 C -0.19 -4.09 10.04 22.11 0.22 -3.87 15 16 C 0.13 3.20 11.15 84.84 0.95 4.15 15 17 N -0.52 -17.81 10.39 -192.22 -2.00 -19.81 15 18 C 0.24 9.75 8.40 134.04 1.13 10.88 15 19 N -0.55 -23.55 6.03 -180.55 -1.09 -24.64 15 20 H 0.42 16.54 7.99 -92.71 -0.74 15.80 15 21 H 0.29 14.58 8.29 -92.71 -0.77 13.81 15 22 H 0.14 6.35 8.06 -2.91 -0.02 6.33 15 23 H 0.16 3.43 8.06 -2.91 -0.02 3.40 15 24 H 0.18 2.11 8.06 -2.91 -0.02 2.09 15 25 H 0.20 2.92 8.06 -2.91 -0.02 2.89 15 Total: -1.00 -73.83 234.88 3.39 -70.44 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.50 Total: 23.27 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 3.77 Total: -6.58 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -2.83 Total: -88.49 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.08 Total: -38.40 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -73.83 3.39 -70.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306486292.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.267 kcal (2) G-P(sol) polarization free energy of solvation -73.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds