Wall clock time and date at job start Mon Mar 30 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47333 * 29.06993 * 3 2 1 5 5 C 1.50706 * 109.47200 * 180.02562 * 4 3 2 6 6 C 1.38522 * 119.83617 * 89.99626 * 5 4 3 7 7 C 1.39291 * 120.42240 * 179.97438 * 6 5 4 8 8 N 1.39687 * 119.95058 * 179.97438 * 7 6 5 9 9 C 1.38316 * 120.09671 * 0.02562 * 7 6 5 10 10 C 1.40573 * 119.67656 * 359.97438 * 9 7 6 11 11 C 1.41405 * 120.20605 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99603 * 204.44333 * 11 10 9 13 13 C 1.39926 * 120.00331 * 24.43938 * 11 10 9 14 14 N 1.30834 * 120.00079 * 17.88430 * 13 11 10 15 15 Si 1.86798 * 120.00110 * 197.87740 * 13 11 10 16 16 H 1.48508 * 109.46882 * 94.69775 * 15 13 11 17 17 H 1.48504 * 109.47467 * 214.69248 * 15 13 11 18 18 H 1.48501 * 109.47192 * 334.69653 * 15 13 11 19 19 C 1.37639 * 119.83598 * 269.72514 * 5 4 3 20 20 H 1.09001 * 109.46989 * 149.07207 * 3 2 1 21 21 H 1.09001 * 109.46825 * 269.06768 * 3 2 1 22 22 H 1.09001 * 109.47258 * 300.00049 * 4 3 2 23 23 H 1.09001 * 109.47349 * 60.00096 * 4 3 2 24 24 H 1.07998 * 119.79162 * 359.96428 * 6 5 4 25 25 H 0.96999 * 119.99916 * 0.02562 * 8 7 6 26 26 H 0.97000 * 119.99394 * 180.02562 * 8 7 6 27 27 H 1.08003 * 120.16610 * 179.97438 * 9 7 6 28 28 H 0.96991 * 120.00450 * 179.97438 * 14 13 11 29 29 H 1.07998 * 120.05658 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.2598 -0.7008 5 6 4.6257 -1.2594 -0.7003 6 6 5.3146 -1.8432 0.3502 7 6 6.7075 -1.8502 0.3629 8 7 7.3922 -2.4411 1.4274 9 6 7.4135 -1.2719 -0.6764 10 6 6.7186 -0.6784 -1.7445 11 6 7.4291 -0.0836 -2.8126 12 1 6.9639 0.6893 -3.4065 13 6 8.7349 -0.4962 -3.1001 14 7 9.1766 -1.6382 -2.6391 15 14 9.8475 0.5834 -4.1421 16 1 10.6829 1.4339 -3.2564 17 1 10.7264 -0.2729 -4.9785 18 1 9.0181 1.4477 -5.0197 19 6 5.3107 -0.6840 -1.7462 20 1 2.9710 0.8824 -0.5282 21 1 2.9713 0.0175 1.0276 22 1 2.7557 -2.1415 -0.1726 23 1 2.7554 -1.2767 -1.7284 24 1 4.7684 -2.2956 1.1646 25 1 6.8977 -2.8465 2.1569 26 1 8.3621 -2.4460 1.4371 27 1 8.4935 -1.2764 -0.6675 28 1 10.0815 -1.9244 -2.8386 29 1 4.7692 -0.2336 -2.5649 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306513953.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:22 Heat of formation + Delta-G solvation = 25.390427 kcal Electronic energy + Delta-G solvation = -13299.451261 eV Core-core repulsion = 10993.259121 eV Total energy + Delta-G solvation = -2306.192141 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.05551 -36.59875 -34.19366 -34.06420 -31.78539 -29.12512 -27.32864 -25.25277 -23.91471 -20.52549 -19.83717 -17.34216 -16.96289 -15.73736 -15.28127 -14.83233 -14.55258 -14.36132 -13.59769 -13.04735 -12.90933 -12.69052 -12.04752 -11.90047 -11.65771 -11.42723 -11.21403 -11.04368 -10.80975 -10.47363 -10.44766 -9.71276 -9.53379 -9.41842 -8.86156 -7.30104 -6.76124 -6.23761 -4.34611 2.77026 2.90312 2.96020 3.09242 3.12774 3.16493 3.32314 3.95883 4.25727 4.67035 4.96578 5.38404 5.48732 5.71209 5.84466 6.07314 6.13976 6.42246 6.53663 6.87856 7.08288 7.10440 7.36245 7.42652 7.72916 7.85661 7.93583 8.07245 8.16666 8.48490 8.74109 8.90915 8.98283 9.07637 10.22933 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.032105 B = 0.007412 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.935140 B = 3776.933335 C = 4511.181954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.217 3.783 3 C -0.023 4.023 4 C -0.064 4.064 5 C -0.036 4.036 6 C -0.294 4.294 7 C 0.216 3.784 8 N -0.895 5.895 9 C -0.234 4.234 10 C 0.140 3.860 11 C -0.464 4.464 12 H 0.077 0.923 13 C 0.078 3.922 14 N -0.792 5.792 15 Si 0.904 3.096 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.262 1.262 19 C -0.247 4.247 20 H 0.111 0.889 21 H 0.108 0.892 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.381 0.619 26 H 0.387 0.613 27 H 0.116 0.884 28 H 0.277 0.723 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 0.947 4.047 4.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.100 4.100 3 C -0.063 4.063 4 C -0.103 4.103 5 C -0.037 4.037 6 C -0.317 4.317 7 C 0.115 3.885 8 N -0.435 5.435 9 C -0.258 4.258 10 C 0.137 3.863 11 C -0.494 4.494 12 H 0.095 0.905 13 C -0.140 4.140 14 N -0.417 5.417 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.186 1.186 19 C -0.268 4.268 20 H 0.129 0.871 21 H 0.126 0.874 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.207 0.793 26 H 0.213 0.787 27 H 0.134 0.866 28 H 0.088 0.912 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.945 0.831 3.961 5.005 hybrid contribution 1.316 0.159 -0.207 1.341 sum -1.630 0.990 3.754 4.210 Atomic orbital electron populations 1.81162 1.13353 1.09578 1.09822 1.29629 0.95615 0.92397 0.92338 1.19439 0.80114 1.02095 1.04674 1.20379 0.94388 0.95194 1.00335 1.18783 0.91604 0.98440 0.94876 1.19655 0.91704 1.17714 1.02610 1.17651 0.91041 0.92227 0.87616 1.42353 1.07991 1.68499 1.24676 1.20762 0.99300 1.10892 0.94895 1.17300 0.90587 0.87782 0.90674 1.19575 0.97517 1.19078 1.13218 0.90477 1.25878 0.98477 0.94191 0.95445 1.69863 1.17344 1.17036 1.37457 0.86375 0.80014 0.80703 0.80035 1.19469 1.20454 1.18599 1.20726 0.94211 1.11983 0.99882 0.87086 0.87357 0.91603 0.91235 0.89638 0.79332 0.78700 0.86607 0.91172 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.50 18.54 42.15 0.78 -6.71 15 2 C 0.22 3.00 15.43 -20.76 -0.32 2.68 15 3 C -0.02 -0.29 5.68 -29.52 -0.17 -0.45 15 4 C -0.06 -0.96 5.29 -27.88 -0.15 -1.11 15 5 C -0.04 -0.71 5.12 -104.73 -0.54 -1.25 15 6 C -0.29 -5.93 9.55 -39.09 -0.37 -6.31 15 7 C 0.22 4.68 6.74 -83.86 -0.57 4.12 15 8 N -0.89 -15.69 9.09 32.37 0.29 -15.39 15 9 C -0.23 -5.79 8.54 -38.67 -0.33 -6.12 15 10 C 0.14 3.55 5.57 -106.85 -0.60 2.95 15 11 C -0.46 -11.92 9.05 -37.75 -0.34 -12.26 15 12 H 0.08 1.91 7.91 -52.48 -0.41 1.49 15 13 C 0.08 1.91 5.14 -17.34 -0.09 1.82 15 14 N -0.79 -20.02 10.96 55.55 0.61 -19.41 15 15 Si 0.90 18.30 29.59 -169.99 -5.03 13.27 15 16 H -0.27 -5.40 7.11 56.52 0.40 -4.99 15 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 18 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 19 C -0.25 -5.57 9.43 -38.84 -0.37 -5.94 15 20 H 0.11 1.29 8.14 -51.93 -0.42 0.86 15 21 H 0.11 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.07 0.93 8.08 -51.93 -0.42 0.51 15 23 H 0.07 1.02 8.08 -51.93 -0.42 0.60 15 24 H 0.09 1.54 8.06 -52.49 -0.42 1.11 15 25 H 0.38 5.60 8.84 -40.82 -0.36 5.24 15 26 H 0.39 6.36 8.84 -40.82 -0.36 6.00 15 27 H 0.12 3.00 6.15 -52.48 -0.32 2.68 15 28 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 29 H 0.09 1.93 8.06 -52.49 -0.42 1.51 15 LS Contribution 263.64 15.07 3.97 3.97 Total: -1.00 -27.97 263.64 -6.33 -34.30 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -3.12 Total: 11.84 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -3.83 Total: -21.87 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 1.68 Total: -41.52 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.97 -6.33 -34.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306513953.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.692 kcal (2) G-P(sol) polarization free energy of solvation -27.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds