Wall clock time and date at job start Mon Mar 30 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47333 * 29.06993 * 3 2 1 5 5 C 1.50706 * 109.47200 * 180.02562 * 4 3 2 6 6 C 1.38522 * 119.83617 * 89.99626 * 5 4 3 7 7 C 1.39291 * 120.42240 * 179.97438 * 6 5 4 8 8 N 1.39687 * 119.95058 * 179.97438 * 7 6 5 9 9 C 1.38316 * 120.09671 * 0.02562 * 7 6 5 10 10 C 1.40573 * 119.67656 * 359.97438 * 9 7 6 11 11 C 1.41405 * 120.20605 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99603 * 204.44333 * 11 10 9 13 13 C 1.39926 * 120.00331 * 24.43938 * 11 10 9 14 14 N 1.30834 * 120.00079 * 17.88430 * 13 11 10 15 15 Si 1.86798 * 120.00110 * 197.87740 * 13 11 10 16 16 H 1.48508 * 109.46882 * 94.69775 * 15 13 11 17 17 H 1.48504 * 109.47467 * 214.69248 * 15 13 11 18 18 H 1.48501 * 109.47192 * 334.69653 * 15 13 11 19 19 C 1.37639 * 119.83598 * 269.72514 * 5 4 3 20 20 H 1.09001 * 109.46989 * 149.07207 * 3 2 1 21 21 H 1.09001 * 109.46825 * 269.06768 * 3 2 1 22 22 H 1.09001 * 109.47258 * 300.00049 * 4 3 2 23 23 H 1.09001 * 109.47349 * 60.00096 * 4 3 2 24 24 H 1.07998 * 119.79162 * 359.96428 * 6 5 4 25 25 H 0.96999 * 119.99916 * 0.02562 * 8 7 6 26 26 H 0.97000 * 119.99394 * 180.02562 * 8 7 6 27 27 H 1.08003 * 120.16610 * 179.97438 * 9 7 6 28 28 H 0.96991 * 120.00450 * 179.97438 * 14 13 11 29 29 H 1.07998 * 120.05658 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.2598 -0.7008 5 6 4.6257 -1.2594 -0.7003 6 6 5.3146 -1.8432 0.3502 7 6 6.7075 -1.8502 0.3629 8 7 7.3922 -2.4411 1.4274 9 6 7.4135 -1.2719 -0.6764 10 6 6.7186 -0.6784 -1.7445 11 6 7.4291 -0.0836 -2.8126 12 1 6.9639 0.6893 -3.4065 13 6 8.7349 -0.4962 -3.1001 14 7 9.1766 -1.6382 -2.6391 15 14 9.8475 0.5834 -4.1421 16 1 10.6829 1.4339 -3.2564 17 1 10.7264 -0.2729 -4.9785 18 1 9.0181 1.4477 -5.0197 19 6 5.3107 -0.6840 -1.7462 20 1 2.9710 0.8824 -0.5282 21 1 2.9713 0.0175 1.0276 22 1 2.7557 -2.1415 -0.1726 23 1 2.7554 -1.2767 -1.7284 24 1 4.7684 -2.2956 1.1646 25 1 6.8977 -2.8465 2.1569 26 1 8.3621 -2.4460 1.4371 27 1 8.4935 -1.2764 -0.6675 28 1 10.0815 -1.9244 -2.8386 29 1 4.7692 -0.2336 -2.5649 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306513953.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:21 Heat of formation + Delta-G solvation = 9.097992 kcal Electronic energy + Delta-G solvation = -13300.157754 eV Core-core repulsion = 10993.259121 eV Total energy + Delta-G solvation = -2306.898633 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.67396 -37.81275 -35.84560 -35.57219 -33.32572 -30.70569 -28.92769 -27.04703 -25.28043 -22.24795 -21.43028 -18.88406 -18.27190 -17.30593 -16.94704 -16.24893 -16.13328 -15.79188 -14.82969 -14.56755 -14.41691 -14.16761 -13.50178 -13.36685 -13.14377 -12.96964 -12.63919 -12.54538 -12.43024 -12.08461 -11.69516 -11.42238 -11.22152 -11.12424 -10.53251 -9.04815 -8.55957 -7.87140 -6.23409 1.13755 1.36824 1.42701 1.54736 1.64578 1.87495 1.87669 2.27186 2.87227 3.16234 3.51110 3.91816 4.33023 4.44639 4.49861 4.88558 4.91593 5.03189 5.17979 5.27215 5.31622 5.40625 5.61747 5.75182 6.08764 6.27641 6.34175 6.44891 6.65515 6.72454 7.02061 7.16433 7.31911 7.47114 8.44654 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.032105 B = 0.007412 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.935140 B = 3776.933335 C = 4511.181954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.244 3.756 3 C -0.012 4.012 4 C -0.060 4.060 5 C -0.021 4.021 6 C -0.292 4.292 7 C 0.213 3.787 8 N -0.881 5.881 9 C -0.266 4.266 10 C 0.108 3.892 11 C -0.503 4.503 12 H 0.072 0.928 13 C 0.037 3.963 14 N -0.825 5.825 15 Si 0.974 3.026 16 H -0.265 1.265 17 H -0.272 1.272 18 H -0.259 1.259 19 C -0.270 4.270 20 H 0.122 0.878 21 H 0.130 0.870 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.398 0.602 26 H 0.392 0.608 27 H 0.094 0.906 28 H 0.282 0.718 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 0.940 4.992 5.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.072 4.072 3 C -0.052 4.052 4 C -0.099 4.099 5 C -0.022 4.022 6 C -0.315 4.315 7 C 0.110 3.890 8 N -0.422 5.422 9 C -0.291 4.291 10 C 0.106 3.894 11 C -0.533 4.533 12 H 0.091 0.909 13 C -0.177 4.177 14 N -0.452 5.452 15 Si 0.796 3.204 16 H -0.190 1.190 17 H -0.197 1.197 18 H -0.183 1.183 19 C -0.290 4.290 20 H 0.140 0.860 21 H 0.148 0.852 22 H 0.100 0.900 23 H 0.090 0.910 24 H 0.136 0.864 25 H 0.227 0.773 26 H 0.219 0.781 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.649 0.807 4.941 6.195 hybrid contribution 1.458 0.082 -0.385 1.511 sum -2.191 0.889 4.556 5.133 Atomic orbital electron populations 1.81205 1.14677 1.10919 1.11377 1.29699 0.95493 0.91100 0.90951 1.19404 0.78904 1.01087 1.05765 1.20345 0.90948 0.97230 1.01352 1.19136 0.94100 0.95798 0.93181 1.20074 0.91183 1.16833 1.03431 1.17829 0.92028 0.91462 0.87671 1.42256 1.08430 1.67502 1.24023 1.20681 0.98496 1.13337 0.96549 1.17681 0.92189 0.88534 0.91039 1.19824 0.99020 1.20148 1.14345 0.90946 1.26643 0.99396 0.95136 0.96562 1.69928 1.17914 1.18370 1.38964 0.85321 0.77932 0.78820 0.78372 1.18983 1.19725 1.18309 1.20880 0.93413 1.13372 1.01382 0.86045 0.85188 0.89951 0.90976 0.86419 0.77301 0.78133 0.88839 0.90725 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.33 18.54 20.01 0.37 -14.96 15 2 C 0.24 6.03 15.43 89.44 1.38 7.41 15 3 C -0.01 -0.25 5.68 28.79 0.16 -0.08 15 4 C -0.06 -1.59 5.29 29.85 0.16 -1.43 15 5 C -0.02 -0.79 5.12 -19.94 -0.10 -0.89 15 6 C -0.29 -10.97 9.55 22.59 0.22 -10.75 15 7 C 0.21 9.00 6.74 38.16 0.26 9.26 15 8 N -0.88 -29.26 9.09 -51.49 -0.47 -29.73 15 9 C -0.27 -13.42 8.54 22.86 0.20 -13.23 15 10 C 0.11 5.65 5.57 -21.31 -0.12 5.53 15 11 C -0.50 -26.79 9.05 23.46 0.21 -26.58 15 12 H 0.07 3.73 7.91 -2.91 -0.02 3.71 15 13 C 0.04 1.86 5.14 85.25 0.44 2.29 15 14 N -0.83 -43.08 10.96 21.82 0.24 -42.85 15 15 Si 0.97 38.28 29.59 68.60 2.03 40.31 15 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 17 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15 18 H -0.26 -9.94 7.11 99.48 0.71 -9.24 15 19 C -0.27 -12.11 9.43 22.75 0.21 -11.90 15 20 H 0.12 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.13 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.08 1.96 8.08 -2.39 -0.02 1.94 15 23 H 0.07 1.91 8.08 -2.39 -0.02 1.89 15 24 H 0.12 3.66 8.06 -2.91 -0.02 3.64 15 25 H 0.40 10.51 8.84 -92.71 -0.82 9.69 15 26 H 0.39 12.47 8.84 -92.71 -0.82 11.65 15 27 H 0.09 5.05 6.15 -2.91 -0.02 5.03 15 28 H 0.28 13.41 8.30 -92.71 -0.77 12.64 15 29 H 0.09 4.01 8.06 -2.91 -0.02 3.99 15 Total: -1.00 -61.71 263.64 4.73 -56.97 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.45 Total: 30.63 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 3.01 Total: -40.38 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: 0.14 Total: -87.53 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -61.71 4.73 -56.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306513953.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.069 kcal (2) G-P(sol) polarization free energy of solvation -61.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds