Wall clock time and date at job start Mon Mar 30 2020 02:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47181 * 179.97438 * 9 7 2 11 11 C 1.81392 * 103.00377 * 179.97438 * 10 9 7 12 12 H 1.09010 * 109.47575 * 305.00323 * 11 10 9 13 13 C 1.53002 * 109.47276 * 64.99708 * 11 10 9 14 14 C 1.52998 * 109.47177 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47525 * 300.00149 * 14 13 11 16 16 C 1.52998 * 109.46820 * 60.00235 * 15 14 13 17 17 C 1.52998 * 109.47496 * 185.00134 * 11 10 9 18 18 H 1.09002 * 109.47009 * 60.00012 * 17 11 10 19 19 O 1.42905 * 109.46926 * 300.00132 * 17 11 10 20 20 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 22 22 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 23 23 H 1.08998 * 109.47419 * 300.00695 * 13 11 10 24 24 H 1.08999 * 109.46795 * 59.99932 * 13 11 10 25 25 H 1.09002 * 109.46882 * 180.02562 * 14 13 11 26 26 H 1.09001 * 109.47006 * 60.01109 * 14 13 11 27 27 H 1.08999 * 109.47062 * 300.00255 * 15 14 13 28 28 H 1.08998 * 109.46927 * 179.97438 * 15 14 13 29 29 H 1.08996 * 109.47537 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.47262 * 59.99604 * 16 15 14 31 31 H 0.96698 * 113.99993 * 179.97438 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3517 -5.3366 0.0013 12 1 0.6619 -5.2783 0.8434 13 6 0.5578 -5.3848 -1.3057 14 6 -0.3511 -6.6155 -1.3053 15 6 0.5018 -7.8795 -1.1798 16 6 1.2956 -7.8314 0.1272 17 6 2.2041 -6.6009 0.1272 18 1 2.7696 -6.5666 1.0584 19 8 3.1084 -6.6775 -0.9768 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8896 23 1 -0.0495 -4.4841 -1.3954 24 1 1.2475 -5.4432 -2.1477 25 1 -0.9164 -6.6500 -2.2367 26 1 -1.0409 -6.5575 -0.4633 27 1 1.1915 -7.9375 -2.0219 28 1 -0.1459 -8.7562 -1.1791 29 1 1.9036 -8.7316 0.2165 30 1 0.6058 -7.7733 0.9693 31 1 3.6819 -7.4559 -0.9621 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306538862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:51 Heat of formation + Delta-G solvation = -83.820995 kcal Electronic energy + Delta-G solvation = -12805.963587 eV Core-core repulsion = 10598.186885 eV Total energy + Delta-G solvation = -2207.776703 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.92684 -34.93885 -33.44128 -30.78371 -29.63291 -27.93063 -23.20047 -22.62527 -22.15551 -19.71681 -17.09608 -16.72519 -15.97242 -14.91896 -14.62389 -14.14937 -13.75492 -13.51022 -13.05289 -12.76646 -12.55219 -12.32311 -11.82125 -11.48851 -11.30316 -11.09690 -10.72387 -10.62190 -10.38039 -10.10971 -9.87126 -9.57801 -8.97453 -8.65390 -8.49928 -6.63819 -6.48896 -4.19660 2.61894 3.43003 3.45130 3.63434 3.83737 4.34490 4.49019 4.73982 4.88292 4.93119 5.25034 5.27968 5.29442 5.44511 5.54222 5.60385 5.73011 5.87381 5.95196 6.11301 6.21031 6.23449 6.39800 6.64083 6.83279 6.90035 7.80243 7.88501 8.32042 8.70012 9.49697 10.91174 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.058863 B = 0.007049 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.570242 B = 3971.208160 C = 4265.524309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 1.077 2.923 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.589 4.589 8 H 0.060 0.940 9 C 0.068 3.932 10 S -0.267 6.267 11 C -0.056 4.056 12 H 0.084 0.916 13 C -0.109 4.109 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.148 4.148 17 C 0.129 3.871 18 H 0.058 0.942 19 O -0.546 6.546 20 H 0.267 0.733 21 H 0.021 0.979 22 H 0.026 0.974 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -15.255 -0.558 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.628 4.628 8 H 0.078 0.922 9 C -0.079 4.079 10 S -0.037 6.037 11 C -0.184 4.184 12 H 0.102 0.898 13 C -0.148 4.148 14 C -0.156 4.156 15 C -0.151 4.151 16 C -0.187 4.187 17 C 0.069 3.931 18 H 0.076 0.924 19 O -0.350 6.350 20 H 0.078 0.922 21 H 0.040 0.960 22 H 0.044 0.956 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.784 -12.976 -0.697 13.116 hybrid contribution -0.990 -2.302 0.277 2.522 sum 0.794 -15.278 -0.420 15.305 Atomic orbital electron populations 1.70805 1.06837 1.30490 1.46111 1.25960 0.96388 1.02546 0.93284 0.83434 0.74799 0.74576 0.76839 1.21132 1.21162 1.20588 1.21561 0.94746 0.89878 1.56629 0.92157 1.21115 0.94888 0.93395 0.98477 1.86749 1.19173 1.00129 1.97661 1.23064 0.98768 0.95852 1.00744 0.89812 1.21767 0.98099 0.97573 0.97363 1.21576 0.97743 0.94821 1.01506 1.21432 0.98482 0.97408 0.97763 1.22255 0.99515 0.97900 0.99038 1.21411 0.89584 0.92665 0.89436 0.92394 1.86688 1.52658 1.48543 1.47147 0.92243 0.96037 0.95585 0.91841 0.90194 0.91964 0.92404 0.91262 0.92476 0.91682 0.91171 0.78627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.75 13.65 55.43 0.76 -26.99 16 2 C 0.02 0.69 5.46 -17.82 -0.10 0.59 16 3 Si 1.08 25.60 29.90 -169.99 -5.08 20.51 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.59 -17.41 9.13 -34.44 -0.31 -17.72 16 8 H 0.06 1.80 7.71 -52.49 -0.40 1.40 16 9 C 0.07 1.84 4.70 36.00 0.17 2.01 16 10 S -0.27 -6.17 20.71 -107.50 -2.23 -8.40 16 11 C -0.06 -0.99 2.47 -26.73 -0.07 -1.05 16 12 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 13 C -0.11 -1.84 4.97 -26.73 -0.13 -1.97 16 14 C -0.12 -1.54 5.92 -26.73 -0.16 -1.69 16 15 C -0.11 -1.28 5.78 -26.73 -0.15 -1.43 16 16 C -0.15 -1.63 5.63 -26.76 -0.15 -1.78 16 17 C 0.13 1.84 3.20 -26.76 -0.09 1.75 16 18 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 19 O -0.55 -7.92 11.56 -35.23 -0.41 -8.32 16 20 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 21 H 0.02 0.59 8.01 -51.92 -0.42 0.18 16 22 H 0.03 0.72 7.01 -51.92 -0.36 0.35 16 23 H 0.06 1.19 6.92 -51.93 -0.36 0.83 16 24 H 0.08 1.45 7.68 -51.93 -0.40 1.05 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.37 3.51 9.08 45.56 0.41 3.92 16 LS Contribution 262.72 15.07 3.96 3.96 Total: -1.00 -32.26 262.72 -7.97 -40.23 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.98 Total: 0.29 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -0.99 Total: -21.29 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.76 Total: -26.99 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.41 Total: -8.32 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.51 kcal Atomic # 16 Polarization: -6.17 SS G_CDS: -2.23 Total: -8.40 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.26 -7.97 -40.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.588 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds