Wall clock time and date at job start Mon Mar 30 2020 02:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47181 * 179.97438 * 9 7 2 11 11 C 1.81392 * 103.00377 * 179.97438 * 10 9 7 12 12 H 1.09010 * 109.47575 * 305.00323 * 11 10 9 13 13 C 1.53002 * 109.47276 * 64.99708 * 11 10 9 14 14 C 1.52998 * 109.47177 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47525 * 300.00149 * 14 13 11 16 16 C 1.52998 * 109.46820 * 60.00235 * 15 14 13 17 17 C 1.52998 * 109.47496 * 185.00134 * 11 10 9 18 18 H 1.09002 * 109.47009 * 60.00012 * 17 11 10 19 19 O 1.42905 * 109.46926 * 300.00132 * 17 11 10 20 20 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 22 22 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 23 23 H 1.08998 * 109.47419 * 300.00695 * 13 11 10 24 24 H 1.08999 * 109.46795 * 59.99932 * 13 11 10 25 25 H 1.09002 * 109.46882 * 180.02562 * 14 13 11 26 26 H 1.09001 * 109.47006 * 60.01109 * 14 13 11 27 27 H 1.08999 * 109.47062 * 300.00255 * 15 14 13 28 28 H 1.08998 * 109.46927 * 179.97438 * 15 14 13 29 29 H 1.08996 * 109.47537 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.47262 * 59.99604 * 16 15 14 31 31 H 0.96698 * 113.99993 * 179.97438 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3517 -5.3366 0.0013 12 1 0.6619 -5.2783 0.8434 13 6 0.5578 -5.3848 -1.3057 14 6 -0.3511 -6.6155 -1.3053 15 6 0.5018 -7.8795 -1.1798 16 6 1.2956 -7.8314 0.1272 17 6 2.2041 -6.6009 0.1272 18 1 2.7696 -6.5666 1.0584 19 8 3.1084 -6.6775 -0.9768 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8896 23 1 -0.0495 -4.4841 -1.3954 24 1 1.2475 -5.4432 -2.1477 25 1 -0.9164 -6.6500 -2.2367 26 1 -1.0409 -6.5575 -0.4633 27 1 1.1915 -7.9375 -2.0219 28 1 -0.1459 -8.7562 -1.1791 29 1 1.9036 -8.7316 0.2165 30 1 0.6058 -7.7733 0.9693 31 1 3.6819 -7.4559 -0.9621 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306538862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:51 Heat of formation + Delta-G solvation = -105.644050 kcal Electronic energy + Delta-G solvation = -12806.909906 eV Core-core repulsion = 10598.186885 eV Total energy + Delta-G solvation = -2208.723022 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.05339 -36.08809 -35.68706 -31.96024 -30.76337 -30.14170 -25.34803 -23.77277 -23.40536 -20.88096 -19.22857 -17.81449 -17.42547 -16.50834 -15.88595 -15.67964 -15.59366 -15.08304 -14.68460 -14.24971 -13.98412 -13.70729 -13.37727 -13.02709 -12.67285 -12.56695 -12.25942 -11.98832 -11.87015 -11.54137 -11.18421 -10.98214 -10.90937 -10.72695 -10.42226 -8.85318 -8.54188 -6.58235 0.90894 1.50273 1.58675 1.79386 1.92276 2.49434 3.00849 3.24991 3.61701 3.77471 3.92821 4.10998 4.15824 4.33480 4.37222 4.46417 4.57305 4.62318 4.71338 4.85419 4.95179 5.12434 5.14544 5.18637 5.25088 5.47158 5.62326 5.94433 6.32303 6.96157 7.20820 8.55054 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.058863 B = 0.007049 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.570242 B = 3971.208160 C = 4265.524309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.024 4.024 3 Si 1.125 2.875 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.611 4.611 8 H 0.052 0.948 9 C 0.073 3.927 10 S -0.293 6.293 11 C -0.047 4.047 12 H 0.086 0.914 13 C -0.105 4.105 14 C -0.113 4.113 15 C -0.110 4.110 16 C -0.138 4.138 17 C 0.132 3.868 18 H 0.060 0.940 19 O -0.568 6.568 20 H 0.255 0.745 21 H 0.004 0.996 22 H 0.007 0.993 23 H 0.031 0.969 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -16.997 -0.396 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.944 3.056 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.650 4.650 8 H 0.071 0.929 9 C -0.075 4.075 10 S -0.063 6.063 11 C -0.175 4.175 12 H 0.104 0.896 13 C -0.144 4.144 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.177 4.177 17 C 0.072 3.928 18 H 0.078 0.922 19 O -0.376 6.376 20 H 0.065 0.935 21 H 0.022 0.978 22 H 0.025 0.975 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.292 -14.756 -0.535 14.942 hybrid contribution -1.153 -1.885 0.206 2.219 sum 1.139 -16.641 -0.329 16.683 Atomic orbital electron populations 1.70929 1.07733 1.29822 1.47594 1.27597 0.96473 1.06467 0.91810 0.82855 0.74121 0.70396 0.78241 1.19372 1.19177 1.20000 1.21901 0.94614 0.91497 1.56952 0.92941 1.20812 0.95124 0.94920 0.96612 1.86581 1.20263 1.01746 1.97695 1.23306 0.98576 0.94359 1.01280 0.89573 1.21676 0.97979 0.98469 0.96284 1.21578 0.97412 0.93785 1.02452 1.21438 0.98507 0.97006 0.97771 1.22222 0.99295 0.97028 0.99188 1.21394 0.89958 0.91986 0.89443 0.92178 1.86631 1.53354 1.50450 1.47153 0.93545 0.97761 0.97460 0.94981 0.91722 0.90937 0.91708 0.91604 0.89655 0.88368 0.90330 0.75952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.91 13.65 21.45 0.29 -57.62 16 2 C -0.02 -1.42 5.46 84.66 0.46 -0.96 16 3 Si 1.12 51.33 29.90 68.60 2.05 53.38 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.61 -37.17 9.13 25.60 0.23 -36.94 16 8 H 0.05 3.21 7.71 -2.91 -0.02 3.19 16 9 C 0.07 4.11 4.70 71.23 0.34 4.44 16 10 S -0.29 -13.86 20.71 -56.49 -1.17 -15.03 16 11 C -0.05 -1.64 2.47 30.59 0.08 -1.57 16 12 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 13 C -0.10 -3.57 4.97 30.59 0.15 -3.41 16 14 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 15 C -0.11 -2.06 5.78 30.59 0.18 -1.89 16 16 C -0.14 -2.48 5.63 30.58 0.17 -2.31 16 17 C 0.13 3.48 3.20 30.58 0.10 3.58 16 18 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 19 O -0.57 -15.33 11.56 -148.98 -1.72 -17.05 16 20 H 0.26 16.16 7.22 -92.70 -0.67 15.50 16 21 H 0.00 0.25 8.01 -2.39 -0.02 0.23 16 22 H 0.01 0.43 7.01 -2.39 -0.02 0.41 16 23 H 0.03 1.26 6.92 -2.39 -0.02 1.24 16 24 H 0.06 2.38 7.68 -2.39 -0.02 2.36 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.32 7.68 -2.39 -0.02 1.30 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.39 6.32 9.08 -74.06 -0.67 5.65 16 Total: -1.00 -71.56 262.72 1.87 -69.69 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.53 Total: 8.25 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 1.89 Total: -41.61 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.29 Total: -57.62 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.72 Total: -17.05 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Atomic # 16 Polarization: -13.86 SS G_CDS: -1.17 Total: -15.03 kcal Total: -71.56 1.87 -69.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.957 kcal (2) G-P(sol) polarization free energy of solvation -71.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds