Wall clock time and date at job start Mon Mar 30 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48493 * 109.47486 * 270.00431 * 3 2 1 5 5 H 1.48504 * 109.47001 * 30.00276 * 3 2 1 6 6 H 1.48502 * 109.47145 * 149.99833 * 3 2 1 7 7 C 1.37874 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00683 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99670 * 180.02562 * 7 2 1 10 10 S 1.81398 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.81399 * 103.00088 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47098 * 55.00221 * 11 10 9 13 13 C 1.52996 * 109.47143 * 295.00194 * 11 10 9 14 14 C 1.52996 * 109.46951 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47365 * 59.99890 * 14 13 11 16 16 C 1.52996 * 109.47176 * 299.99973 * 15 14 13 17 17 C 1.52997 * 109.46821 * 175.00086 * 11 10 9 18 18 H 1.08990 * 109.47621 * 60.00338 * 17 11 10 19 19 O 1.42899 * 109.47300 * 299.99648 * 17 11 10 20 20 H 0.97002 * 120.00018 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47378 * 59.99872 * 9 7 2 22 22 H 1.09000 * 109.47022 * 299.99473 * 9 7 2 23 23 H 1.09006 * 109.46822 * 299.99683 * 13 11 10 24 24 H 1.08997 * 109.47474 * 59.99798 * 13 11 10 25 25 H 1.09007 * 109.46984 * 179.97438 * 14 13 11 26 26 H 1.08993 * 109.47243 * 299.99585 * 14 13 11 27 27 H 1.09000 * 109.46998 * 59.99958 * 15 14 13 28 28 H 1.09002 * 109.47083 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.47474 * 180.02562 * 16 15 14 30 30 H 1.09006 * 109.46822 * 300.00209 * 16 15 14 31 31 H 0.96699 * 114.00343 * 180.02562 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 16 4.1163 -2.9042 -0.0001 11 6 5.9187 -2.6998 -0.0001 12 1 6.2133 -2.0732 0.8417 13 6 6.3567 -2.0364 -1.3074 14 6 7.8770 -1.8646 -1.3077 15 6 8.5452 -3.2352 -1.1824 16 6 8.1073 -3.8986 0.1249 17 6 6.5874 -4.0702 0.1254 18 1 6.2929 -4.6967 -0.7163 19 8 6.1783 -4.6897 1.3465 20 1 -0.4850 0.8401 0.0004 21 1 3.8746 -0.6807 0.8905 22 1 3.8752 -0.6797 -0.8895 23 1 6.0621 -2.6631 -2.1493 24 1 5.8803 -1.0602 -1.3969 25 1 8.1891 -1.3924 -2.2393 26 1 8.1720 -1.2382 -0.4659 27 1 8.2503 -3.8615 -2.0243 28 1 9.6284 -3.1128 -1.1830 29 1 8.5837 -4.8748 0.2144 30 1 8.4022 -3.2721 0.9668 31 1 6.5649 -5.5639 1.4928 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306538865.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:56 Heat of formation + Delta-G solvation = -77.090439 kcal Electronic energy + Delta-G solvation = -12752.420521 eV Core-core repulsion = 10544.935677 eV Total energy + Delta-G solvation = -2207.484844 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.81981 -35.46297 -32.99627 -30.90129 -29.39163 -29.20256 -22.90774 -22.76695 -21.85884 -19.88193 -17.15628 -16.92147 -16.04969 -14.74686 -14.69375 -14.35796 -13.85875 -13.83147 -12.94104 -12.82648 -12.59557 -12.31561 -12.23369 -11.65247 -11.33559 -10.99442 -10.78984 -10.69084 -10.46373 -10.24369 -9.94469 -9.73190 -9.43649 -8.76381 -8.67511 -6.65374 -6.14179 -4.15388 2.57328 3.22860 3.30415 3.32064 3.76667 4.22118 4.34121 4.66710 4.82635 4.94000 5.15333 5.17582 5.23254 5.33476 5.44565 5.46725 5.65323 5.84586 5.97435 6.03981 6.07000 6.09360 6.23777 6.42445 6.65169 6.76795 7.48542 7.79589 8.35265 8.89485 9.42022 10.98135 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.043302 B = 0.008128 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.462353 B = 3443.953278 C = 3887.169726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.083 0.917 9 C 0.043 3.957 10 S -0.250 6.250 11 C -0.060 4.060 12 H 0.082 0.918 13 C -0.113 4.113 14 C -0.120 4.120 15 C -0.116 4.116 16 C -0.147 4.147 17 C 0.129 3.871 18 H 0.060 0.940 19 O -0.551 6.551 20 H 0.267 0.733 21 H 0.032 0.968 22 H 0.028 0.972 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.789 -5.405 -1.951 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.101 0.899 9 C -0.105 4.105 10 S -0.019 6.019 11 C -0.189 4.189 12 H 0.100 0.900 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.154 4.154 16 C -0.187 4.187 17 C 0.069 3.931 18 H 0.078 0.922 19 O -0.355 6.355 20 H 0.077 0.923 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 16.642 -5.672 -1.868 17.681 hybrid contribution 1.369 1.614 -0.034 2.116 sum 18.011 -4.059 -1.902 18.560 Atomic orbital electron populations 1.69875 1.06121 1.27180 1.49897 1.24864 0.94747 0.98685 0.94263 0.86815 0.80378 0.83688 0.78730 1.19928 1.20813 1.19099 1.20506 0.87047 0.95255 1.52167 0.89878 1.21423 1.00967 0.89318 0.98765 1.86832 0.99679 1.17865 1.97568 1.23047 0.97546 0.97898 1.00396 0.89987 1.21882 0.95155 1.01588 0.96642 1.21618 0.95457 0.96954 1.01922 1.21484 0.99827 0.96746 0.97322 1.22277 0.96256 1.01208 0.98919 1.21432 0.91681 0.92778 0.87204 0.92218 1.86710 1.72795 1.35469 1.40556 0.92301 0.94987 0.95344 0.90665 0.90974 0.91638 0.91963 0.91731 0.91869 0.91642 0.91158 0.78400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.96 55.43 0.77 -26.80 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.83 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -15.09 9.68 -34.44 -0.33 -15.42 16 8 H 0.08 2.69 7.96 -52.49 -0.42 2.28 16 9 C 0.04 1.09 4.46 36.01 0.16 1.25 16 10 S -0.25 -5.59 20.71 -107.50 -2.23 -7.82 16 11 C -0.06 -1.02 2.38 -26.73 -0.06 -1.08 16 12 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 13 C -0.11 -1.67 5.11 -26.74 -0.14 -1.80 16 14 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 15 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 16 C -0.15 -1.56 5.54 -26.76 -0.15 -1.71 16 17 C 0.13 1.80 2.90 -26.75 -0.08 1.72 16 18 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 19 O -0.55 -8.15 12.91 -35.23 -0.45 -8.60 16 20 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 21 H 0.03 0.81 7.20 -51.92 -0.37 0.43 16 22 H 0.03 0.69 6.57 -51.92 -0.34 0.35 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.16 6.92 -51.93 -0.36 0.80 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.37 3.53 9.08 45.56 0.41 3.94 16 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -32.35 262.50 -7.68 -40.03 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.05 Total: 0.07 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -1.01 Total: -17.66 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.45 Total: -8.60 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -2.23 Total: -7.82 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.35 -7.68 -40.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538865.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.059 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds