Wall clock time and date at job start Mon Mar 30 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48493 * 109.47486 * 270.00431 * 3 2 1 5 5 H 1.48504 * 109.47001 * 30.00276 * 3 2 1 6 6 H 1.48502 * 109.47145 * 149.99833 * 3 2 1 7 7 C 1.37874 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00683 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99670 * 180.02562 * 7 2 1 10 10 S 1.81398 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.81399 * 103.00088 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47098 * 55.00221 * 11 10 9 13 13 C 1.52996 * 109.47143 * 295.00194 * 11 10 9 14 14 C 1.52996 * 109.46951 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47365 * 59.99890 * 14 13 11 16 16 C 1.52996 * 109.47176 * 299.99973 * 15 14 13 17 17 C 1.52997 * 109.46821 * 175.00086 * 11 10 9 18 18 H 1.08990 * 109.47621 * 60.00338 * 17 11 10 19 19 O 1.42899 * 109.47300 * 299.99648 * 17 11 10 20 20 H 0.97002 * 120.00018 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47378 * 59.99872 * 9 7 2 22 22 H 1.09000 * 109.47022 * 299.99473 * 9 7 2 23 23 H 1.09006 * 109.46822 * 299.99683 * 13 11 10 24 24 H 1.08997 * 109.47474 * 59.99798 * 13 11 10 25 25 H 1.09007 * 109.46984 * 179.97438 * 14 13 11 26 26 H 1.08993 * 109.47243 * 299.99585 * 14 13 11 27 27 H 1.09000 * 109.46998 * 59.99958 * 15 14 13 28 28 H 1.09002 * 109.47083 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.47474 * 180.02562 * 16 15 14 30 30 H 1.09006 * 109.46822 * 300.00209 * 16 15 14 31 31 H 0.96699 * 114.00343 * 180.02562 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 16 4.1163 -2.9042 -0.0001 11 6 5.9187 -2.6998 -0.0001 12 1 6.2133 -2.0732 0.8417 13 6 6.3567 -2.0364 -1.3074 14 6 7.8770 -1.8646 -1.3077 15 6 8.5452 -3.2352 -1.1824 16 6 8.1073 -3.8986 0.1249 17 6 6.5874 -4.0702 0.1254 18 1 6.2929 -4.6967 -0.7163 19 8 6.1783 -4.6897 1.3465 20 1 -0.4850 0.8401 0.0004 21 1 3.8746 -0.6807 0.8905 22 1 3.8752 -0.6797 -0.8895 23 1 6.0621 -2.6631 -2.1493 24 1 5.8803 -1.0602 -1.3969 25 1 8.1891 -1.3924 -2.2393 26 1 8.1720 -1.2382 -0.4659 27 1 8.2503 -3.8615 -2.0243 28 1 9.6284 -3.1128 -1.1830 29 1 8.5837 -4.8748 0.2144 30 1 8.4022 -3.2721 0.9668 31 1 6.5649 -5.5639 1.4928 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306538865.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:56 Heat of formation + Delta-G solvation = -100.021820 kcal Electronic energy + Delta-G solvation = -12753.414900 eV Core-core repulsion = 10544.935677 eV Total energy + Delta-G solvation = -2208.479223 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.86347 -36.52553 -35.23342 -32.03417 -31.31890 -30.38285 -24.85472 -23.78592 -23.13623 -20.90475 -19.14438 -18.21938 -17.57017 -16.39244 -15.96334 -15.72619 -15.33715 -14.89938 -14.61704 -14.51191 -13.96553 -13.79914 -13.53923 -12.85126 -12.70598 -12.42417 -12.19820 -12.11098 -11.82333 -11.69300 -11.57365 -11.14764 -10.93144 -10.85304 -10.39696 -8.47056 -8.40359 -6.50057 0.94763 1.29505 1.32530 1.43227 1.99262 2.26331 2.91762 3.18601 3.65290 3.93248 3.97179 4.15588 4.21388 4.30902 4.38271 4.48133 4.56511 4.70235 4.79044 4.88944 5.05327 5.13209 5.15875 5.22750 5.24580 5.32825 5.47329 6.04773 6.53318 6.95311 7.12157 8.75821 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.043302 B = 0.008128 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.462353 B = 3443.953278 C = 3887.169726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.531 4.531 8 H 0.033 0.967 9 C 0.053 3.947 10 S -0.301 6.301 11 C -0.044 4.044 12 H 0.073 0.927 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.129 3.871 18 H 0.060 0.940 19 O -0.578 6.578 20 H 0.273 0.727 21 H 0.031 0.969 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.205 -4.722 -2.412 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.570 4.570 8 H 0.052 0.948 9 C -0.095 4.095 10 S -0.071 6.071 11 C -0.173 4.173 12 H 0.092 0.908 13 C -0.152 4.152 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.176 4.176 17 C 0.069 3.931 18 H 0.078 0.922 19 O -0.386 6.386 20 H 0.082 0.918 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 20.065 -5.019 -2.331 20.814 hybrid contribution 0.287 1.260 0.129 1.299 sum 20.351 -3.759 -2.201 20.812 Atomic orbital electron populations 1.70026 1.08221 1.28798 1.50780 1.25921 0.95724 1.03219 0.93221 0.85613 0.79299 0.77731 0.79813 1.18154 1.19870 1.17411 1.20695 0.89511 0.93819 1.52931 0.94834 1.21146 0.98118 0.91286 0.98971 1.86882 1.06084 1.16416 1.97727 1.23263 0.92215 1.00360 1.01491 0.90841 1.21867 0.97916 1.00271 0.95126 1.21614 0.92376 0.98426 1.03019 1.21516 1.01179 0.95517 0.96930 1.22215 0.93038 1.02955 0.99403 1.21489 0.93820 0.90773 0.87004 0.92181 1.86649 1.73825 1.37272 1.40867 0.91754 0.95071 0.94134 0.90653 0.92720 0.89807 0.91816 0.91062 0.89283 0.88777 0.91457 0.75833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.70 13.96 21.45 0.30 -59.40 16 2 C 0.02 1.14 5.47 84.65 0.46 1.60 16 3 Si 0.95 44.19 27.47 68.60 1.88 46.08 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 7 C -0.53 -32.63 9.68 25.60 0.25 -32.38 16 8 H 0.03 2.32 7.96 -2.91 -0.02 2.30 16 9 C 0.05 2.70 4.46 71.24 0.32 3.01 16 10 S -0.30 -13.79 20.71 -56.49 -1.17 -14.96 16 11 C -0.04 -1.47 2.38 30.59 0.07 -1.39 16 12 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 13 C -0.11 -3.11 5.11 30.59 0.16 -2.96 16 14 C -0.12 -2.21 5.92 30.59 0.18 -2.03 16 15 C -0.11 -1.73 5.92 30.59 0.18 -1.55 16 16 C -0.14 -2.38 5.54 30.58 0.17 -2.21 16 17 C 0.13 3.34 2.90 30.58 0.09 3.43 16 18 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 19 O -0.58 -16.28 12.91 -148.98 -1.92 -18.21 16 20 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 21 H 0.03 1.57 7.20 -2.39 -0.02 1.55 16 22 H 0.04 1.95 6.57 -2.39 -0.02 1.93 16 23 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.05 1.69 6.92 -2.39 -0.02 1.67 16 25 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.39 6.70 9.08 -74.06 -0.67 6.02 16 Total: -1.00 -72.89 262.50 1.34 -71.54 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.37 Total: 9.42 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 1.88 Total: -34.47 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.30 Total: -59.40 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -1.92 Total: -18.21 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: -13.79 SS G_CDS: -1.17 Total: -14.96 kcal Total: -72.89 1.34 -71.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538865.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.477 kcal (2) G-P(sol) polarization free energy of solvation -72.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds