Wall clock time and date at job start Mon Mar 30 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30546 * 1 3 3 Si 1.86803 * 119.99405 * 2 1 4 4 H 1.48493 * 109.47317 * 274.97868 * 3 2 1 5 5 H 1.48495 * 109.47407 * 34.98537 * 3 2 1 6 6 H 1.48509 * 109.47004 * 154.98511 * 3 2 1 7 7 C 1.40303 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99808 * 186.22517 * 7 2 1 9 9 C 1.41575 * 120.00150 * 6.23087 * 7 2 1 10 10 O 1.21972 * 120.00205 * 353.63990 * 9 7 2 11 11 C 1.46944 * 120.00028 * 173.64345 * 9 7 2 12 12 C 1.38213 * 126.92646 * 0.42322 * 11 9 7 13 13 N 1.35334 * 109.45915 * 180.02562 * 12 11 9 14 14 H 0.97006 * 124.65358 * 179.74838 * 13 12 11 15 15 C 1.37892 * 110.68611 * 359.75930 * 13 12 11 16 16 N 1.32627 * 132.73083 * 180.02562 * 15 13 12 17 17 C 1.31681 * 121.73727 * 180.02562 * 16 15 13 18 18 C 1.38542 * 121.56357 * 0.02562 * 17 16 15 19 19 C 1.38383 * 119.30756 * 359.97438 * 18 17 16 20 20 C 1.39448 * 118.04604 * 0.02562 * 19 18 17 21 21 H 0.96997 * 120.00189 * 0.02562 * 1 2 3 22 22 H 1.08001 * 125.26922 * 359.78916 * 12 11 9 23 23 H 1.07998 * 119.21552 * 180.02562 * 17 16 15 24 24 H 1.08005 * 120.34203 * 179.97438 * 18 17 16 25 25 H 1.08003 * 120.98073 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2393 1.6179 0.0000 4 1 2.3815 2.1073 -1.3947 5 1 1.4934 2.6200 0.8027 6 1 3.5857 1.4123 0.5921 7 6 2.0070 -1.2150 0.0005 8 1 3.0823 -1.2177 0.1020 9 6 1.3055 -2.4376 -0.1320 10 8 0.0858 -2.4442 -0.1300 11 6 2.0468 -3.6986 -0.2719 12 6 3.4197 -3.8578 -0.2842 13 7 3.7202 -5.1691 -0.4322 14 1 4.6207 -5.5274 -0.4727 15 6 2.5705 -5.9256 -0.5178 16 7 2.3581 -7.2265 -0.6643 17 6 1.1417 -7.7276 -0.7217 18 6 0.0197 -6.9199 -0.6323 19 6 0.1789 -5.5539 -0.4786 20 6 1.4769 -5.0475 -0.4205 21 1 -0.4850 0.8400 -0.0004 22 1 4.1409 -3.0591 -0.1938 23 1 1.0158 -8.7936 -0.8413 24 1 -0.9690 -7.3519 -0.6822 25 1 -0.6769 -4.8991 -0.4056 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306628809.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:10 Heat of formation + Delta-G solvation = 24.879366 kcal Electronic energy + Delta-G solvation = -13431.191323 eV Core-core repulsion = 10989.143927 eV Total energy + Delta-G solvation = -2442.047396 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83283 -37.33458 -36.22208 -32.72162 -32.09656 -29.61421 -28.96607 -26.43664 -23.15947 -22.21395 -21.74743 -18.77960 -17.78268 -16.35330 -15.70497 -15.37102 -15.00567 -14.51389 -14.13908 -13.39082 -12.80617 -12.56265 -12.32666 -12.09561 -11.61941 -11.59287 -11.10829 -11.00855 -10.38377 -10.26331 -9.66061 -8.99403 -8.94369 -7.98707 -7.45384 -7.18945 -6.29256 -4.87478 1.52790 1.85397 2.91898 3.12202 3.13715 3.15567 3.27190 4.00771 4.33270 4.59172 4.95644 5.38220 5.41171 5.55231 5.71606 5.84790 5.94451 6.19634 6.33662 6.63267 6.86167 7.06985 7.20049 7.25673 7.55970 7.78867 8.03598 8.46016 8.81574 8.89854 10.35104 10.58298 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.053988 B = 0.008200 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.509793 B = 3413.877035 C = 3919.041955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.081 3.919 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.418 3.582 10 O -0.544 6.544 11 C -0.174 4.174 12 C 0.065 3.935 13 N -0.576 5.576 14 H 0.412 0.588 15 C 0.263 3.737 16 N -0.508 5.508 17 C 0.120 3.880 18 C -0.216 4.216 19 C -0.012 4.012 20 C -0.120 4.120 21 H 0.273 0.727 22 H 0.183 0.817 23 H 0.152 0.848 24 H 0.130 0.870 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 -7.010 -0.874 8.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.551 4.551 8 H 0.088 0.912 9 C 0.313 3.687 10 O -0.434 6.434 11 C -0.182 4.182 12 C -0.062 4.062 13 N -0.182 5.182 14 H 0.249 0.751 15 C 0.030 3.970 16 N -0.222 5.222 17 C -0.045 4.045 18 C -0.238 4.238 19 C -0.038 4.038 20 C -0.127 4.127 21 H 0.084 0.916 22 H 0.200 0.800 23 H 0.169 0.831 24 H 0.148 0.852 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.203 -7.472 -0.926 9.153 hybrid contribution 0.401 1.118 0.013 1.188 sum 5.605 -6.354 -0.914 8.522 Atomic orbital electron populations 1.69971 1.07503 1.27959 1.31089 1.25961 0.94599 1.00876 0.92735 0.86385 0.80492 0.81219 0.78957 1.19539 1.20212 1.18577 1.20767 0.95082 0.91709 1.47562 0.91157 1.17313 0.88120 0.84576 0.78684 1.90521 1.14912 1.87942 1.49985 1.22701 0.92039 0.95209 1.08285 1.22668 0.97211 0.83589 1.02758 1.41233 1.06651 1.06041 1.64233 0.75149 1.18477 0.86609 0.89135 1.02733 1.66374 1.26183 1.11708 1.17930 1.22217 0.86237 0.99320 0.96773 1.21816 0.99857 0.94257 1.07850 1.21243 0.96623 0.94510 0.91472 1.19887 0.93170 0.94472 1.05207 0.91583 0.80024 0.83060 0.85173 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.00 11.75 55.56 0.65 -20.34 15 2 C 0.08 2.15 5.49 -17.32 -0.10 2.06 15 3 Si 0.91 18.89 29.57 -169.99 -5.03 13.86 15 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 15 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 7 C -0.52 -13.97 8.99 -37.53 -0.34 -14.31 15 8 H 0.07 1.68 6.89 -52.48 -0.36 1.31 15 9 C 0.42 11.78 6.90 -34.79 -0.24 11.54 15 10 O -0.54 -17.19 14.82 4.94 0.07 -17.11 15 11 C -0.17 -4.14 6.31 -102.75 -0.65 -4.78 15 12 C 0.07 1.22 11.35 -16.02 -0.18 1.04 15 13 N -0.58 -9.72 5.96 -11.52 -0.07 -9.79 15 14 H 0.41 5.28 8.96 -40.82 -0.37 4.91 15 15 C 0.26 5.20 8.40 -155.35 -1.31 3.89 15 16 N -0.51 -9.31 10.38 -12.23 -0.13 -9.43 15 17 C 0.12 1.90 11.14 -17.50 -0.20 1.70 15 18 C -0.22 -3.53 10.11 -39.42 -0.40 -3.93 15 19 C -0.01 -0.25 9.98 -39.08 -0.39 -0.64 15 20 C -0.12 -2.69 6.27 -104.93 -0.66 -3.34 15 21 H 0.27 6.98 8.29 -40.82 -0.34 6.64 15 22 H 0.18 2.83 7.31 -52.49 -0.38 2.45 15 23 H 0.15 1.76 8.06 -52.49 -0.42 1.34 15 24 H 0.13 1.67 8.06 -52.48 -0.42 1.25 15 25 H 0.14 3.07 7.55 -52.48 -0.40 2.68 15 LS Contribution 233.87 15.07 3.52 3.52 Total: -1.00 -33.85 233.87 -6.91 -40.76 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -1.49 Total: 5.32 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -4.45 Total: -6.78 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.46 Total: -39.57 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.07 Total: -17.11 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -33.85 -6.91 -40.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306628809.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.635 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds