Wall clock time and date at job start Mon Mar 30 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46909 * 229.82803 * 3 2 1 5 5 C 1.50703 * 109.46962 * 179.97438 * 4 3 2 6 6 C 1.38524 * 119.78954 * 265.00225 * 5 4 3 7 7 C 1.37647 * 120.32163 * 180.27478 * 6 5 4 8 8 C 1.40784 * 119.89722 * 359.49868 * 7 6 5 9 9 C 1.41406 * 120.20880 * 180.27002 * 8 7 6 10 10 H 1.07993 * 119.99861 * 204.58788 * 9 8 7 11 11 C 1.39932 * 119.99937 * 24.59040 * 9 8 7 12 12 N 1.30837 * 119.99777 * 17.74947 * 11 9 8 13 13 Si 1.86799 * 119.99920 * 197.75018 * 11 9 8 14 14 H 1.48503 * 109.47052 * 89.99929 * 13 11 9 15 15 H 1.48502 * 109.47078 * 209.99898 * 13 11 9 16 16 H 1.48494 * 109.47086 * 330.00103 * 13 11 9 17 17 C 1.40565 * 119.58208 * 0.49672 * 8 7 6 18 18 C 1.38319 * 119.67872 * 359.75186 * 17 8 7 19 19 N 1.39678 * 119.95496 * 180.02562 * 18 17 8 20 20 H 1.09007 * 109.46707 * 109.82649 * 3 2 1 21 21 H 1.09000 * 109.47003 * 349.83132 * 3 2 1 22 22 H 1.09001 * 109.47180 * 60.00612 * 4 3 2 23 23 H 1.08995 * 109.47172 * 299.99745 * 4 3 2 24 24 H 1.07996 * 119.83291 * 359.97438 * 6 5 4 25 25 H 1.08000 * 120.04626 * 179.74245 * 7 6 5 26 26 H 0.96998 * 119.99204 * 179.97438 * 12 11 9 27 27 H 1.07998 * 120.15986 * 179.77924 * 17 8 7 28 28 H 0.97002 * 120.00471 * 179.97438 * 19 18 17 29 29 H 0.96998 * 120.00234 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9314 1.1022 5 6 4.6245 0.9316 1.1026 6 6 5.3126 0.0843 1.9555 7 6 6.6890 0.0795 1.9690 8 6 7.4022 0.9318 1.1048 9 6 8.8163 0.9282 1.1091 10 1 9.3595 1.8010 0.7784 11 6 9.5117 -0.2064 1.5419 12 7 8.9009 -1.3614 1.6102 13 14 11.3119 -0.0717 2.0221 14 1 11.4159 0.2393 3.4704 15 1 11.9965 -1.3594 1.7419 16 1 11.9542 1.0119 1.2358 17 6 6.6998 1.7899 0.2410 18 6 5.3166 1.7842 0.2456 19 7 4.6128 2.6341 -0.6108 20 1 2.9711 0.3494 -0.9668 21 1 2.9717 -1.0107 0.1814 22 1 2.7544 0.5826 2.0690 23 1 2.7537 1.9427 0.9207 24 1 4.7664 -0.5723 2.6165 25 1 7.2209 -0.5800 2.6388 26 1 9.3832 -2.1479 1.9099 27 1 7.2375 2.4502 -0.4233 28 1 3.6428 2.6304 -0.6084 29 1 5.0940 3.2281 -1.2078 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306635859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:23 Heat of formation + Delta-G solvation = 27.176564 kcal Electronic energy + Delta-G solvation = -13385.914057 eV Core-core repulsion = 11079.799370 eV Total energy + Delta-G solvation = -2306.114688 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.24762 -36.53425 -34.63313 -32.87818 -32.42912 -29.37899 -27.15850 -25.90265 -22.94328 -20.86868 -19.79675 -17.36604 -17.19600 -16.17957 -15.23431 -14.81370 -14.45810 -14.22250 -13.42496 -12.97510 -12.89714 -12.53445 -12.14017 -12.06444 -11.86299 -11.42847 -11.14292 -11.07850 -10.85896 -10.44454 -10.42357 -9.77423 -9.46070 -9.38384 -8.91366 -7.38231 -6.77007 -6.30430 -4.36080 2.73880 2.95561 2.95931 3.07518 3.10699 3.19184 3.31584 3.93039 4.27541 4.63548 4.83303 5.38815 5.54045 5.76462 5.85533 6.09371 6.25098 6.34334 6.48720 7.01556 7.06424 7.08067 7.29894 7.38233 7.73233 7.81142 7.89276 8.07297 8.22369 8.45835 8.68188 8.77227 8.94707 9.05024 10.18168 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.055603 B = 0.006513 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.450689 B = 4298.068429 C = 4638.747857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.216 3.784 3 C -0.030 4.030 4 C -0.037 4.037 5 C -0.283 4.283 6 C -0.062 4.062 7 C -0.199 4.199 8 C 0.145 3.855 9 C -0.461 4.461 10 H 0.076 0.924 11 C 0.078 3.922 12 N -0.788 5.788 13 Si 0.906 3.094 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.295 4.295 18 C 0.239 3.761 19 N -0.896 5.896 20 H 0.104 0.896 21 H 0.109 0.891 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.280 0.720 27 H 0.089 0.911 28 H 0.382 0.618 29 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 2.083 -1.370 3.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.101 4.101 3 C -0.070 4.070 4 C -0.076 4.076 5 C -0.288 4.288 6 C -0.081 4.081 7 C -0.220 4.220 8 C 0.141 3.859 9 C -0.491 4.491 10 H 0.094 0.906 11 C -0.141 4.141 12 N -0.413 5.413 13 Si 0.731 3.269 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.187 1.187 17 C -0.320 4.320 18 C 0.138 3.862 19 N -0.437 5.437 20 H 0.122 0.878 21 H 0.127 0.873 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.133 0.867 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.210 0.790 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.557 1.762 -1.274 5.050 hybrid contribution 1.164 0.133 -0.087 1.175 sum -3.393 1.896 -1.361 4.118 Atomic orbital electron populations 1.81154 1.13408 1.09842 1.09807 1.29783 0.95737 0.92311 0.92289 1.19661 0.79750 1.04385 1.03208 1.19927 0.94461 0.96958 0.96265 1.18316 0.91561 1.09311 1.09597 1.20326 0.94453 0.96458 0.96891 1.21166 0.92221 1.05144 1.03441 1.17364 0.92886 0.88427 0.87184 1.19607 0.91661 0.99650 1.38167 0.90571 1.25906 1.00707 0.94640 0.92818 1.69853 1.38506 0.99535 1.33369 0.86347 0.82050 0.78591 0.79930 1.19281 1.20370 1.18681 1.20383 0.90865 1.11882 1.08840 1.17264 0.90965 0.88986 0.89006 1.42480 1.07718 1.46998 1.46518 0.87796 0.87314 0.92015 0.92812 0.89418 0.86743 0.90932 0.89280 0.79018 0.78835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.53 18.54 42.15 0.78 -6.75 15 2 C 0.22 3.00 15.43 -20.76 -0.32 2.68 15 3 C -0.03 -0.38 5.68 -29.52 -0.17 -0.55 15 4 C -0.04 -0.55 4.72 -27.88 -0.13 -0.68 15 5 C -0.28 -5.41 5.17 -104.12 -0.54 -5.95 15 6 C -0.06 -1.32 9.64 -39.69 -0.38 -1.71 15 7 C -0.20 -4.90 8.69 -38.84 -0.34 -5.24 15 8 C 0.14 3.68 5.57 -106.85 -0.60 3.09 15 9 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 15 10 H 0.08 1.90 7.91 -52.49 -0.41 1.48 15 11 C 0.08 1.89 5.14 -17.34 -0.09 1.80 15 12 N -0.79 -19.68 10.96 55.55 0.61 -19.07 15 13 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 15 14 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 15 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 16 H -0.26 -5.23 7.11 56.52 0.40 -4.82 15 17 C -0.30 -6.82 9.63 -38.67 -0.37 -7.19 15 18 C 0.24 4.75 6.72 -83.86 -0.56 4.19 15 19 N -0.90 -13.74 8.98 32.37 0.29 -13.45 15 20 H 0.10 1.25 8.14 -51.93 -0.42 0.82 15 21 H 0.11 1.34 8.14 -51.93 -0.42 0.91 15 22 H 0.06 0.89 8.05 -51.93 -0.42 0.47 15 23 H 0.05 0.74 6.79 -51.93 -0.35 0.39 15 24 H 0.09 1.67 8.06 -52.49 -0.42 1.25 15 25 H 0.11 2.95 6.16 -52.49 -0.32 2.62 15 26 H 0.28 6.36 8.30 -40.82 -0.34 6.03 15 27 H 0.09 1.98 8.06 -52.49 -0.42 1.56 15 28 H 0.38 5.02 6.91 -40.82 -0.28 4.74 15 29 H 0.39 5.33 8.84 -40.82 -0.36 4.97 15 LS Contribution 260.20 15.07 3.92 3.92 Total: -1.00 -27.29 260.20 -6.25 -33.54 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -2.98 Total: 10.43 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -3.84 Total: -21.76 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 1.68 Total: -39.27 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.29 -6.25 -33.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306635859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.716 kcal (2) G-P(sol) polarization free energy of solvation -27.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds