Wall clock time and date at job start Mon Mar 30 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46909 * 229.82803 * 3 2 1 5 5 C 1.50703 * 109.46962 * 179.97438 * 4 3 2 6 6 C 1.38524 * 119.78954 * 265.00225 * 5 4 3 7 7 C 1.37647 * 120.32163 * 180.27478 * 6 5 4 8 8 C 1.40784 * 119.89722 * 359.49868 * 7 6 5 9 9 C 1.41406 * 120.20880 * 180.27002 * 8 7 6 10 10 H 1.07993 * 119.99861 * 204.58788 * 9 8 7 11 11 C 1.39932 * 119.99937 * 24.59040 * 9 8 7 12 12 N 1.30837 * 119.99777 * 17.74947 * 11 9 8 13 13 Si 1.86799 * 119.99920 * 197.75018 * 11 9 8 14 14 H 1.48503 * 109.47052 * 89.99929 * 13 11 9 15 15 H 1.48502 * 109.47078 * 209.99898 * 13 11 9 16 16 H 1.48494 * 109.47086 * 330.00103 * 13 11 9 17 17 C 1.40565 * 119.58208 * 0.49672 * 8 7 6 18 18 C 1.38319 * 119.67872 * 359.75186 * 17 8 7 19 19 N 1.39678 * 119.95496 * 180.02562 * 18 17 8 20 20 H 1.09007 * 109.46707 * 109.82649 * 3 2 1 21 21 H 1.09000 * 109.47003 * 349.83132 * 3 2 1 22 22 H 1.09001 * 109.47180 * 60.00612 * 4 3 2 23 23 H 1.08995 * 109.47172 * 299.99745 * 4 3 2 24 24 H 1.07996 * 119.83291 * 359.97438 * 6 5 4 25 25 H 1.08000 * 120.04626 * 179.74245 * 7 6 5 26 26 H 0.96998 * 119.99204 * 179.97438 * 12 11 9 27 27 H 1.07998 * 120.15986 * 179.77924 * 17 8 7 28 28 H 0.97002 * 120.00471 * 179.97438 * 19 18 17 29 29 H 0.96998 * 120.00234 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9314 1.1022 5 6 4.6245 0.9316 1.1026 6 6 5.3126 0.0843 1.9555 7 6 6.6890 0.0795 1.9690 8 6 7.4022 0.9318 1.1048 9 6 8.8163 0.9282 1.1091 10 1 9.3595 1.8010 0.7784 11 6 9.5117 -0.2064 1.5419 12 7 8.9009 -1.3614 1.6102 13 14 11.3119 -0.0717 2.0221 14 1 11.4159 0.2393 3.4704 15 1 11.9965 -1.3594 1.7419 16 1 11.9542 1.0119 1.2358 17 6 6.6998 1.7899 0.2410 18 6 5.3166 1.7842 0.2456 19 7 4.6128 2.6341 -0.6108 20 1 2.9711 0.3494 -0.9668 21 1 2.9717 -1.0107 0.1814 22 1 2.7544 0.5826 2.0690 23 1 2.7537 1.9427 0.9207 24 1 4.7664 -0.5723 2.6165 25 1 7.2209 -0.5800 2.6388 26 1 9.3832 -2.1479 1.9099 27 1 7.2375 2.4502 -0.4233 28 1 3.6428 2.6304 -0.6084 29 1 5.0940 3.2281 -1.2078 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306635859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:23 Heat of formation + Delta-G solvation = 11.515494 kcal Electronic energy + Delta-G solvation = -13386.593172 eV Core-core repulsion = 11079.799370 eV Total energy + Delta-G solvation = -2306.793803 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83903 -37.76803 -36.27465 -34.26315 -34.04269 -30.99883 -28.78285 -27.49826 -24.43930 -22.54889 -21.42685 -19.10624 -18.31754 -17.63649 -16.92045 -16.31672 -15.84726 -15.61356 -14.75291 -14.56874 -14.41968 -13.94487 -13.78262 -13.39223 -13.30593 -13.00566 -12.75068 -12.50598 -12.34079 -12.00378 -11.76851 -11.40283 -11.14446 -11.10123 -10.60754 -9.13914 -8.54492 -7.88628 -6.23134 1.08994 1.42075 1.47407 1.54246 1.61524 1.86264 1.86489 2.26417 2.84080 3.17580 3.47831 3.92132 4.28546 4.49964 4.58781 4.65818 4.91411 5.02314 5.25573 5.26412 5.30779 5.44203 5.55688 5.73505 6.10498 6.17416 6.32940 6.47034 6.64798 6.75002 7.00969 7.11343 7.30967 7.44336 8.42278 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.055603 B = 0.006513 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.450689 B = 4298.068429 C = 4638.747857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.242 3.758 3 C -0.019 4.019 4 C -0.034 4.034 5 C -0.266 4.266 6 C -0.062 4.062 7 C -0.233 4.233 8 C 0.113 3.887 9 C -0.504 4.504 10 H 0.068 0.932 11 C 0.038 3.962 12 N -0.820 5.820 13 Si 0.975 3.025 14 H -0.264 1.264 15 H -0.269 1.269 16 H -0.261 1.261 17 C -0.317 4.317 18 C 0.244 3.756 19 N -0.876 5.876 20 H 0.118 0.882 21 H 0.118 0.882 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.285 0.715 27 H 0.086 0.914 28 H 0.399 0.601 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 2.492 -1.745 5.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.074 4.074 3 C -0.059 4.059 4 C -0.073 4.073 5 C -0.271 4.271 6 C -0.081 4.081 7 C -0.254 4.254 8 C 0.110 3.890 9 C -0.534 4.534 10 H 0.086 0.914 11 C -0.177 4.177 12 N -0.446 5.446 13 Si 0.797 3.203 14 H -0.189 1.189 15 H -0.193 1.193 16 H -0.185 1.185 17 C -0.341 4.341 18 C 0.141 3.859 19 N -0.418 5.418 20 H 0.136 0.864 21 H 0.136 0.864 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.128 0.872 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.229 0.771 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.850 2.199 -1.675 6.470 hybrid contribution 1.360 0.075 -0.019 1.362 sum -4.490 2.273 -1.694 5.310 Atomic orbital electron populations 1.81205 1.14616 1.11160 1.11098 1.29755 0.95502 0.91076 0.91058 1.19567 0.78800 1.04474 1.03016 1.19921 0.90968 0.98658 0.97778 1.18691 0.94037 1.07070 1.07343 1.20626 0.93413 0.96767 0.97265 1.21084 0.93739 1.06195 1.04365 1.17682 0.93375 0.89694 0.88271 1.19808 0.92495 1.00253 1.40806 0.91388 1.26650 1.04832 0.93919 0.92293 1.69907 1.40234 1.00123 1.34353 0.85309 0.76796 0.78757 0.79454 1.18908 1.19347 1.18522 1.20507 0.92560 1.12023 1.09015 1.17296 0.90151 0.89199 0.89273 1.42336 1.08506 1.45747 1.45239 0.86394 0.86357 0.90989 0.91111 0.87154 0.89008 0.90413 0.89533 0.77124 0.77641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -14.96 18.54 20.01 0.37 -14.58 15 2 C 0.24 5.88 15.43 89.44 1.38 7.26 15 3 C -0.02 -0.39 5.68 28.79 0.16 -0.23 15 4 C -0.03 -0.87 4.72 29.85 0.14 -0.73 15 5 C -0.27 -9.48 5.17 -19.54 -0.10 -9.58 15 6 C -0.06 -2.57 9.64 22.20 0.21 -2.35 15 7 C -0.23 -11.76 8.69 22.75 0.20 -11.56 15 8 C 0.11 5.93 5.57 -21.31 -0.12 5.81 15 9 C -0.50 -27.09 9.05 23.46 0.21 -26.88 15 10 H 0.07 3.58 7.91 -2.91 -0.02 3.56 15 11 C 0.04 1.91 5.14 85.25 0.44 2.35 15 12 N -0.82 -42.44 10.96 21.82 0.24 -42.20 15 13 Si 0.98 38.21 29.59 68.60 2.03 40.24 15 14 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 15 H -0.27 -9.99 7.11 99.48 0.71 -9.28 15 16 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 17 C -0.32 -14.70 9.63 22.86 0.22 -14.48 15 18 C 0.24 9.23 6.72 38.17 0.26 9.48 15 19 N -0.88 -23.92 8.98 -51.49 -0.46 -24.38 15 20 H 0.12 2.27 8.14 -2.38 -0.02 2.25 15 21 H 0.12 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.07 1.75 8.05 -2.39 -0.02 1.73 15 23 H 0.07 1.60 6.79 -2.39 -0.02 1.58 15 24 H 0.11 3.99 8.06 -2.91 -0.02 3.96 15 25 H 0.09 4.96 6.16 -2.91 -0.02 4.94 15 26 H 0.29 13.37 8.30 -92.71 -0.77 12.60 15 27 H 0.09 3.92 8.06 -2.91 -0.02 3.90 15 28 H 0.40 8.65 6.91 -92.71 -0.64 8.01 15 29 H 0.40 9.75 8.84 -92.71 -0.82 8.93 15 Total: -1.00 -60.87 260.20 4.91 -55.95 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.27 Total: 25.88 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 3.00 Total: -40.90 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: 0.15 Total: -81.17 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -60.87 4.91 -55.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306635859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.470 kcal (2) G-P(sol) polarization free energy of solvation -60.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds