Wall clock time and date at job start Mon Mar 30 2020 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30534 * 1 3 3 Si 1.86795 * 120.00023 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99981 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99841 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99846 * 3 2 1 7 7 C 1.40347 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.41803 * 120.00335 * 359.97438 * 7 2 1 10 10 O 1.21773 * 119.99800 * 0.02562 * 9 7 2 11 11 C 1.47823 * 120.00397 * 180.27394 * 9 7 2 12 12 C 1.39745 * 120.15270 * 359.45881 * 11 9 7 13 13 C 1.37884 * 119.84134 * 179.67579 * 12 11 9 14 14 C 1.38444 * 120.15381 * 0.61395 * 13 12 11 15 15 C 1.50702 * 119.84270 * 179.69912 * 14 13 12 16 16 C 1.53004 * 117.49842 * 8.72813 * 15 14 13 17 17 C 1.53001 * 117.50086 * 300.06678 * 15 14 13 18 18 C 1.38440 * 120.31352 * 359.67843 * 14 13 12 19 19 C 1.37890 * 120.15600 * 0.02562 * 18 14 13 20 20 H 0.96999 * 119.99945 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.07321 * 359.97438 * 12 11 9 22 22 H 1.07998 * 119.92443 * 180.29081 * 13 12 11 23 23 H 1.09000 * 115.54641 * 154.39648 * 15 14 13 24 24 H 1.08994 * 117.49992 * 359.97438 * 16 15 14 25 25 H 1.09000 * 117.49688 * 145.02598 * 16 15 14 26 26 H 1.09001 * 117.49918 * 214.98269 * 17 15 14 27 27 H 1.08999 * 117.49779 * 359.97438 * 17 15 14 28 28 H 1.07999 * 119.92529 * 180.02562 * 18 14 13 29 29 H 1.07997 * 120.07653 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4368 2.6526 0.7000 6 1 3.5369 1.4402 0.7001 7 6 2.0071 -1.2155 0.0005 8 1 3.0871 -1.2155 0.0010 9 6 1.2981 -2.4435 0.0016 10 8 0.0804 -2.4435 0.0016 11 6 2.0372 -3.7237 0.0083 12 6 3.4346 -3.7275 0.0022 13 6 4.1175 -4.9253 0.0152 14 6 3.4220 -6.1224 0.0216 15 6 4.1755 -7.4274 0.0290 16 6 5.6904 -7.3674 0.2351 17 6 5.1180 -7.7058 -1.1437 18 6 2.0376 -6.1261 0.0216 19 6 1.3417 -4.9358 0.0147 20 1 -0.4850 0.8400 -0.0004 21 1 3.9783 -2.7944 -0.0079 22 1 5.1975 -4.9298 0.0153 23 1 3.6424 -8.2756 0.4585 24 1 6.1421 -6.3840 0.3649 25 1 6.1540 -8.1763 0.7998 26 1 5.2052 -8.7371 -1.4855 27 1 5.1927 -6.9451 -1.9208 28 1 1.5014 -7.0636 0.0270 29 1 0.2617 -4.9402 0.0152 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306767351.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:46 Heat of formation + Delta-G solvation = -19.378105 kcal Electronic energy + Delta-G solvation = -13392.685088 eV Core-core repulsion = 11052.258888 eV Total energy + Delta-G solvation = -2340.426201 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.57956 -38.76663 -37.08227 -34.82350 -32.19045 -31.37018 -28.88540 -25.33331 -23.63894 -22.91144 -22.27887 -20.83192 -18.62550 -17.99733 -17.05026 -16.14264 -15.83881 -15.48686 -15.19846 -14.58170 -14.49603 -14.28384 -13.63333 -13.39361 -13.19610 -12.75103 -12.58497 -12.31334 -12.12111 -12.06469 -11.72543 -11.43739 -11.16140 -11.01619 -9.80885 -9.65196 -9.29683 -8.37814 -7.12177 0.17595 0.56542 1.36415 1.37190 1.54337 2.16869 2.19216 2.76777 3.19360 3.67883 3.71952 3.96694 4.06871 4.15746 4.23313 4.28279 4.40110 4.61896 4.73299 4.86186 4.98962 5.13836 5.17225 5.22162 5.23078 5.33142 5.56244 5.69754 5.77567 5.92929 6.16596 6.65761 6.75829 8.20786 8.45449 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.049901 B = 0.006820 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.976796 B = 4104.618156 C = 4586.186945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.020 3.980 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.244 1.244 7 C -0.542 4.542 8 H 0.096 0.904 9 C 0.358 3.642 10 O -0.600 6.600 11 C -0.152 4.152 12 C -0.094 4.094 13 C -0.130 4.130 14 C -0.053 4.053 15 C -0.131 4.131 16 C -0.168 4.168 17 C -0.164 4.164 18 C -0.125 4.125 19 C -0.109 4.109 20 H 0.283 0.717 21 H 0.131 0.869 22 H 0.150 0.850 23 H 0.124 0.876 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.143 0.857 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.777 -10.095 -0.302 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.199 4.199 3 Si 0.817 3.183 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.114 0.886 9 C 0.258 3.742 10 O -0.495 6.495 11 C -0.153 4.153 12 C -0.112 4.112 13 C -0.147 4.147 14 C -0.053 4.053 15 C -0.148 4.148 16 C -0.205 4.205 17 C -0.201 4.201 18 C -0.143 4.143 19 C -0.127 4.127 20 H 0.093 0.907 21 H 0.149 0.851 22 H 0.167 0.833 23 H 0.142 0.858 24 H 0.117 0.883 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.106 0.894 28 H 0.161 0.839 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.039 -10.072 -0.299 15.699 hybrid contribution -0.435 0.888 -0.005 0.989 sum 11.604 -9.183 -0.305 14.801 Atomic orbital electron populations 1.70113 1.10103 1.29988 1.31493 1.27365 0.95561 1.05813 0.91170 0.84997 0.79066 0.74334 0.79894 1.18133 1.19209 1.16717 1.21482 0.96206 0.92231 1.47309 0.88609 1.18970 0.88259 0.88632 0.78297 1.90421 1.17257 1.89818 1.51996 1.21542 0.95813 0.96409 1.01510 1.21554 0.92688 0.99197 0.97774 1.21247 1.00779 0.91089 1.01621 1.19545 0.92917 0.94414 0.98427 1.21063 0.92575 0.95287 1.05921 1.23195 0.93600 1.04073 0.99610 1.23111 1.02028 1.03467 0.91526 1.21054 0.94169 0.97252 1.01795 1.21322 0.99595 0.92637 0.99149 0.90660 0.85142 0.83256 0.85788 0.88320 0.86527 0.86597 0.89383 0.83884 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.78 11.73 21.89 0.26 -47.52 15 2 C 0.02 1.09 5.50 85.40 0.47 1.56 15 3 Si 1.00 39.71 29.56 68.60 2.03 41.73 15 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 6 H -0.24 -8.96 7.11 99.48 0.71 -8.25 15 7 C -0.54 -31.16 8.86 23.67 0.21 -30.95 15 8 H 0.10 4.87 6.03 -2.91 -0.02 4.85 15 9 C 0.36 21.99 6.92 25.69 0.18 22.17 15 10 O -0.60 -41.85 14.90 -4.58 -0.07 -41.92 15 11 C -0.15 -7.66 5.88 -20.01 -0.12 -7.78 15 12 C -0.09 -3.88 9.44 22.55 0.21 -3.67 15 13 C -0.13 -4.23 9.28 22.24 0.21 -4.02 15 14 C -0.05 -1.63 5.62 -19.77 -0.11 -1.74 15 15 C -0.13 -2.86 6.03 -11.54 -0.07 -2.93 15 16 C -0.17 -2.89 9.86 30.62 0.30 -2.59 15 17 C -0.16 -2.96 10.16 30.62 0.31 -2.65 15 18 C -0.12 -4.39 9.72 22.24 0.22 -4.17 15 19 C -0.11 -4.95 9.60 22.55 0.22 -4.73 15 20 H 0.28 15.24 8.29 -92.71 -0.77 14.47 15 21 H 0.13 5.17 6.21 -2.91 -0.02 5.15 15 22 H 0.15 3.77 6.00 -2.91 -0.02 3.75 15 23 H 0.12 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.10 1.72 6.16 -2.39 -0.01 1.71 15 25 H 0.12 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.12 1.59 8.14 -2.39 -0.02 1.57 15 27 H 0.09 1.75 8.14 -2.39 -0.02 1.74 15 28 H 0.14 4.06 8.06 -2.91 -0.02 4.03 15 29 H 0.10 4.94 7.65 -2.91 -0.02 4.92 15 Total: -1.00 -75.26 255.36 5.40 -69.86 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.16 Total: 19.34 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 2.02 Total: -41.50 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.26 Total: -47.52 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.07 Total: -41.92 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -75.26 5.40 -69.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306767351.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.485 kcal (2) G-P(sol) polarization free energy of solvation -75.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds