Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86799 * 119.99663 * 2 1 4 4 H 1.48504 * 109.46951 * 239.99639 * 3 2 1 5 5 H 1.48501 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47331 * 120.00030 * 3 2 1 7 7 C 1.39919 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99780 * 197.85963 * 7 2 1 9 9 C 1.41294 * 120.00004 * 17.86723 * 7 2 1 10 10 C 1.41301 * 119.96716 * 204.74753 * 9 7 2 11 11 C 1.35962 * 120.45943 * 179.97438 * 10 9 7 12 12 C 1.39586 * 120.33063 * 359.97438 * 11 10 9 13 13 N 1.37164 * 133.58866 * 180.02562 * 12 11 10 14 14 H 0.96996 * 126.41244 * 0.02562 * 13 12 11 15 15 C 1.37279 * 107.17118 * 179.73991 * 13 12 11 16 16 C 1.47178 * 125.13826 * 180.28230 * 15 13 12 17 17 O 1.21261 * 119.99893 * 0.02562 * 16 15 13 18 18 N 1.31098 * 109.72286 * 0.26974 * 15 13 12 19 19 C 1.34458 * 109.66083 * 359.97438 * 18 15 13 20 20 C 1.39692 * 133.21832 * 179.97438 * 19 18 15 21 21 H 0.96999 * 120.00502 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.77060 * 359.97438 * 10 9 7 23 23 H 1.07999 * 119.83021 * 180.02562 * 11 10 9 24 24 H 1.07995 * 119.99957 * 180.02562 * 16 15 13 25 25 H 1.07999 * 120.30135 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6964 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0082 -1.2117 0.0005 8 1 3.0491 -1.2341 0.2874 9 6 1.3528 -2.4060 -0.3744 10 6 1.8288 -3.6502 0.0969 11 6 1.2056 -4.8055 -0.2571 12 6 0.0865 -4.7759 -1.0909 13 7 -0.7336 -5.7462 -1.6079 14 1 -0.6583 -6.7020 -1.4611 15 6 -1.6847 -5.1107 -2.3670 16 6 -2.7706 -5.7815 -3.0998 17 8 -2.8738 -6.9890 -3.0593 18 7 -1.4798 -3.8162 -2.3402 19 6 -0.4065 -3.5437 -1.5775 20 6 0.2361 -2.3562 -1.2195 21 1 -0.4851 0.8400 -0.0004 22 1 2.6937 -3.6836 0.7428 23 1 1.5778 -5.7508 0.1093 24 1 -3.4755 -5.1982 -3.6736 25 1 -0.1314 -1.4073 -1.5814 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306798671.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = 28.121753 kcal Electronic energy + Delta-G solvation = -13304.359176 eV Core-core repulsion = 10862.452380 eV Total energy + Delta-G solvation = -2441.906796 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14078 -38.61503 -36.28286 -33.37348 -32.23942 -29.35191 -28.72878 -25.87190 -24.21668 -21.22620 -20.58297 -20.15896 -17.62379 -17.12047 -16.02856 -15.66962 -15.05171 -14.85564 -14.33114 -13.41832 -13.28614 -13.13155 -12.73288 -11.95833 -11.37663 -11.12799 -10.84480 -10.52058 -10.16736 -10.11460 -9.95849 -9.85735 -9.21261 -9.01088 -7.40103 -7.06591 -6.75544 -4.35384 1.13728 2.60959 2.73961 3.08634 3.09779 3.17475 3.48006 3.88516 3.93975 4.44670 4.58855 5.18746 5.52387 5.58068 5.98205 6.23511 6.46547 6.61402 6.76760 7.12778 7.14285 7.36416 7.44179 7.73559 7.84998 7.96653 8.16401 8.37257 8.75244 8.82969 8.84706 10.20135 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.056610 B = 0.007486 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.493299 B = 3739.537271 C = 4159.612079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.079 0.921 9 C 0.091 3.909 10 C -0.129 4.129 11 C -0.121 4.121 12 C -0.014 4.014 13 N -0.573 5.573 14 H 0.414 0.586 15 C 0.129 3.871 16 C 0.436 3.564 17 O -0.476 6.476 18 N -0.445 5.445 19 C 0.074 3.926 20 C -0.144 4.144 21 H 0.282 0.718 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.134 0.866 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 -4.234 -2.068 4.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.149 4.149 11 C -0.142 4.142 12 C -0.124 4.124 13 N -0.187 5.187 14 H 0.251 0.749 15 C -0.130 4.130 16 C 0.294 3.706 17 O -0.346 6.346 18 N -0.173 5.173 19 C -0.046 4.046 20 C -0.167 4.167 21 H 0.093 0.907 22 H 0.128 0.872 23 H 0.116 0.884 24 H 0.150 0.850 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.460 -4.131 -2.476 5.033 hybrid contribution 0.888 -0.204 0.651 1.120 sum -0.572 -4.336 -1.825 4.739 Atomic orbital electron populations 1.69813 1.07515 1.29446 1.34643 1.25865 0.94709 1.01237 0.92446 0.86376 0.80121 0.80379 0.79889 1.18827 1.20358 1.19108 1.19397 0.98039 0.91032 1.40754 0.90248 1.17339 0.92054 0.91875 0.90100 1.20982 1.00634 0.92289 1.01002 1.19273 0.95643 0.98017 1.01251 1.18937 0.98371 0.88964 1.06133 1.42516 1.25324 1.08828 1.42041 0.74874 1.23801 0.97003 0.89740 1.02422 1.23287 0.82061 0.88473 0.76812 1.90525 1.70847 1.17625 1.55623 1.70009 1.16787 1.10947 1.19551 1.19008 0.93619 0.93626 0.98369 1.20503 0.99737 0.94336 1.02090 0.90672 0.87236 0.88428 0.84992 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.20 10.98 55.55 0.61 -19.59 15 2 C 0.08 1.85 5.12 -17.34 -0.09 1.76 15 3 Si 0.91 18.18 29.60 -169.99 -5.03 13.15 15 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 7 C -0.46 -11.67 9.03 -37.79 -0.34 -12.02 15 8 H 0.08 1.88 7.91 -52.49 -0.41 1.47 15 9 C 0.09 2.31 5.57 -106.86 -0.59 1.71 15 10 C -0.13 -2.88 9.70 -39.23 -0.38 -3.26 15 11 C -0.12 -2.52 9.99 -39.90 -0.40 -2.92 15 12 C -0.01 -0.32 7.30 -83.80 -0.61 -0.93 15 13 N -0.57 -10.83 6.22 -8.39 -0.05 -10.88 15 14 H 0.41 6.50 8.96 -40.82 -0.37 6.14 15 15 C 0.13 2.45 7.92 -154.48 -1.22 1.23 15 16 C 0.44 6.34 11.78 34.36 0.40 6.74 15 17 O -0.48 -7.70 17.90 5.57 0.10 -7.60 15 18 N -0.44 -10.00 11.26 -8.92 -0.10 -10.10 15 19 C 0.07 1.83 7.19 -84.99 -0.61 1.22 15 20 C -0.14 -3.78 8.76 -38.33 -0.34 -4.11 15 21 H 0.28 6.63 8.30 -40.82 -0.34 6.29 15 22 H 0.11 2.18 8.06 -52.49 -0.42 1.76 15 23 H 0.10 1.70 8.06 -52.49 -0.42 1.28 15 24 H 0.13 1.38 8.06 -52.49 -0.42 0.96 15 25 H 0.13 3.59 6.16 -52.49 -0.32 3.27 15 LS Contribution 235.14 15.07 3.54 3.54 Total: -1.00 -29.06 235.14 -6.62 -35.68 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -1.51 Total: 6.38 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -4.18 Total: -10.58 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.46 Total: -40.58 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.10 Total: -7.60 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.06 -6.62 -35.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306798671.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.799 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds