Wall clock time and date at job start Mon Mar 30 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86799 * 119.99663 * 2 1 4 4 H 1.48504 * 109.46951 * 239.99639 * 3 2 1 5 5 H 1.48501 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47331 * 120.00030 * 3 2 1 7 7 C 1.39919 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99780 * 197.85963 * 7 2 1 9 9 C 1.41294 * 120.00004 * 17.86723 * 7 2 1 10 10 C 1.41301 * 119.96716 * 204.74753 * 9 7 2 11 11 C 1.35962 * 120.45943 * 179.97438 * 10 9 7 12 12 C 1.39586 * 120.33063 * 359.97438 * 11 10 9 13 13 N 1.37164 * 133.58866 * 180.02562 * 12 11 10 14 14 H 0.96996 * 126.41244 * 0.02562 * 13 12 11 15 15 C 1.37279 * 107.17118 * 179.73991 * 13 12 11 16 16 C 1.47178 * 125.13826 * 180.28230 * 15 13 12 17 17 O 1.21261 * 119.99893 * 0.02562 * 16 15 13 18 18 N 1.31098 * 109.72286 * 0.26974 * 15 13 12 19 19 C 1.34458 * 109.66083 * 359.97438 * 18 15 13 20 20 C 1.39692 * 133.21832 * 179.97438 * 19 18 15 21 21 H 0.96999 * 120.00502 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.77060 * 359.97438 * 10 9 7 23 23 H 1.07999 * 119.83021 * 180.02562 * 11 10 9 24 24 H 1.07995 * 119.99957 * 180.02562 * 16 15 13 25 25 H 1.07999 * 120.30135 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6964 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0082 -1.2117 0.0005 8 1 3.0491 -1.2341 0.2874 9 6 1.3528 -2.4060 -0.3744 10 6 1.8288 -3.6502 0.0969 11 6 1.2056 -4.8055 -0.2571 12 6 0.0865 -4.7759 -1.0909 13 7 -0.7336 -5.7462 -1.6079 14 1 -0.6583 -6.7020 -1.4611 15 6 -1.6847 -5.1107 -2.3670 16 6 -2.7706 -5.7815 -3.0998 17 8 -2.8738 -6.9890 -3.0593 18 7 -1.4798 -3.8162 -2.3402 19 6 -0.4065 -3.5437 -1.5775 20 6 0.2361 -2.3562 -1.2195 21 1 -0.4851 0.8400 -0.0004 22 1 2.6937 -3.6836 0.7428 23 1 1.5778 -5.7508 0.1093 24 1 -3.4755 -5.1982 -3.6736 25 1 -0.1314 -1.4073 -1.5814 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306798671.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:11 Heat of formation + Delta-G solvation = 9.120501 kcal Electronic energy + Delta-G solvation = -13305.183132 eV Core-core repulsion = 10862.452380 eV Total energy + Delta-G solvation = -2442.730752 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.76980 -39.93935 -38.01446 -35.16511 -33.90973 -31.08813 -30.42800 -27.55487 -25.81550 -22.96082 -22.26770 -21.66669 -19.34975 -18.73183 -17.68632 -17.12272 -16.66954 -16.37962 -15.84249 -15.02764 -14.82364 -14.78585 -14.44790 -13.69642 -13.12943 -12.76763 -12.49637 -12.26402 -11.90576 -11.77868 -11.53377 -11.31401 -10.96229 -10.76124 -9.17022 -8.82902 -8.56969 -6.25806 -0.28666 0.96429 1.08104 1.43559 1.54130 1.57341 2.02325 2.25607 2.32080 2.76993 3.04423 3.68037 3.84025 4.19684 4.45940 4.60327 4.77947 4.91919 5.03417 5.29541 5.46158 5.71030 5.89236 6.00808 6.03291 6.19842 6.54461 6.63840 6.92808 7.00161 7.09689 8.40452 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.056610 B = 0.007486 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.493299 B = 3739.537271 C = 4159.612079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.494 4.494 8 H 0.087 0.913 9 C 0.069 3.931 10 C -0.145 4.145 11 C -0.105 4.105 12 C -0.028 4.028 13 N -0.562 5.562 14 H 0.431 0.569 15 C 0.146 3.854 16 C 0.454 3.546 17 O -0.483 6.483 18 N -0.480 5.480 19 C 0.048 3.952 20 C -0.182 4.182 21 H 0.286 0.714 22 H 0.132 0.868 23 H 0.140 0.860 24 H 0.188 0.812 25 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -5.600 -2.305 6.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.182 4.182 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.523 4.523 8 H 0.105 0.895 9 C 0.064 3.936 10 C -0.165 4.165 11 C -0.126 4.126 12 C -0.138 4.138 13 N -0.177 5.177 14 H 0.272 0.728 15 C -0.115 4.115 16 C 0.311 3.689 17 O -0.352 6.352 18 N -0.208 5.208 19 C -0.072 4.072 20 C -0.205 4.205 21 H 0.096 0.904 22 H 0.150 0.850 23 H 0.157 0.843 24 H 0.204 0.796 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.507 -5.542 -2.698 6.345 hybrid contribution 0.774 0.007 0.648 1.009 sum -0.734 -5.534 -2.050 5.947 Atomic orbital electron populations 1.69916 1.09195 1.30440 1.35713 1.26757 0.95349 1.04627 0.91438 0.85270 0.78690 0.75744 0.80110 1.18611 1.19845 1.17942 1.19753 0.98603 0.92015 1.41977 0.89475 1.17692 0.92191 0.93498 0.90178 1.21203 1.01735 0.91739 1.01826 1.19656 0.94314 0.99208 0.99410 1.19068 0.99206 0.88879 1.06642 1.42542 1.24518 1.09388 1.41221 0.72819 1.24909 0.96904 0.89112 1.00624 1.24000 0.80822 0.88316 0.75747 1.90546 1.70598 1.18401 1.55624 1.69964 1.17082 1.12938 1.20845 1.19157 0.94592 0.94218 0.99264 1.20331 1.01613 0.94034 1.04497 0.90374 0.85020 0.84277 0.79585 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.29 10.98 21.82 0.24 -44.05 15 2 C 0.03 1.66 5.12 85.25 0.44 2.10 15 3 Si 0.98 37.93 29.60 68.60 2.03 39.96 15 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 5 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 6 H -0.26 -9.35 7.11 99.48 0.71 -8.64 15 7 C -0.49 -25.73 9.03 23.43 0.21 -25.52 15 8 H 0.09 4.22 7.91 -2.91 -0.02 4.19 15 9 C 0.07 3.62 5.57 -21.31 -0.12 3.50 15 10 C -0.15 -6.47 9.70 22.49 0.22 -6.25 15 11 C -0.11 -4.22 9.99 22.07 0.22 -4.00 15 12 C -0.03 -1.21 7.30 39.40 0.29 -0.92 15 13 N -0.56 -19.96 6.22 -180.47 -1.12 -21.08 15 14 H 0.43 12.17 8.96 -92.71 -0.83 11.33 15 15 C 0.15 5.23 7.92 136.16 1.08 6.31 15 16 C 0.45 11.43 11.78 70.17 0.83 12.26 15 17 O -0.48 -13.68 17.90 -2.97 -0.05 -13.73 15 18 N -0.48 -21.53 11.26 -182.12 -2.05 -23.58 15 19 C 0.05 2.40 7.19 39.86 0.29 2.69 15 20 C -0.18 -10.03 8.76 23.08 0.20 -9.83 15 21 H 0.29 14.02 8.30 -92.71 -0.77 13.25 15 22 H 0.13 5.12 8.06 -2.91 -0.02 5.10 15 23 H 0.14 4.35 8.06 -2.91 -0.02 4.33 15 24 H 0.19 2.93 8.06 -2.91 -0.02 2.91 15 25 H 0.10 5.95 6.16 -2.91 -0.02 5.94 15 Total: -1.00 -65.60 235.14 3.10 -62.50 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.41 Total: 19.65 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 3.65 Total: -19.67 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -2.93 Total: -88.71 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.05 Total: -13.73 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -65.60 3.10 -62.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306798671.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.616 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds