Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86799 * 119.99840 * 2 1 4 4 H 1.48502 * 109.47344 * 239.99838 * 3 2 1 5 5 H 1.48503 * 109.47419 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46934 * 120.00011 * 3 2 1 7 7 C 1.40264 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00096 * 195.26604 * 7 2 1 9 9 C 1.40696 * 119.99831 * 15.26865 * 7 2 1 10 10 C 1.40226 * 120.38974 * 25.50072 * 9 7 2 11 11 C 1.39274 * 119.83631 * 179.97438 * 10 9 7 12 12 N 1.35864 * 132.62540 * 179.97438 * 11 10 9 13 13 C 1.30127 * 109.63314 * 180.02562 * 12 11 10 14 14 N 1.35859 * 110.25302 * 0.24192 * 13 12 11 15 15 H 0.97001 * 126.30238 * 179.74963 * 14 13 12 16 16 C 1.38063 * 107.39304 * 359.61164 * 14 13 12 17 17 C 1.38727 * 133.04333 * 180.02562 * 16 14 13 18 18 C 1.39327 * 120.08486 * 180.30915 * 17 16 14 19 19 C 1.46339 * 120.37888 * 180.02562 * 18 17 16 20 20 O 1.21378 * 119.99531 * 359.97438 * 19 18 17 21 21 H 0.96992 * 119.99871 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.08641 * 359.97438 * 10 9 7 23 23 H 1.08006 * 124.87765 * 179.97438 * 13 12 11 24 24 H 1.08001 * 119.95281 * 0.33163 * 17 16 14 25 25 H 1.07992 * 120.00385 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6965 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0079 -1.2147 0.0005 8 1 3.0593 -1.2311 0.2468 9 6 1.3416 -2.4118 -0.3198 10 6 0.1957 -2.3916 -1.1277 11 6 -0.4545 -3.5835 -1.4381 12 7 -1.5583 -3.8636 -2.1789 13 6 -1.7750 -5.1467 -2.1730 14 7 -0.8325 -5.7793 -1.4264 15 1 -0.7749 -6.7336 -1.2627 16 6 0.0299 -4.8140 -0.9462 17 6 1.1603 -4.8688 -0.1438 18 6 1.8387 -3.6979 0.1880 19 6 3.0321 -3.7483 1.0334 20 8 3.4359 -4.8143 1.4502 21 1 -0.4849 0.8400 -0.0004 22 1 -0.1819 -1.4541 -1.5084 23 1 -2.5897 -5.6378 -2.6843 24 1 1.5151 -5.8203 0.2237 25 1 3.5529 -2.8369 1.2872 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306881223.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = 23.940620 kcal Electronic energy + Delta-G solvation = -13520.561301 eV Core-core repulsion = 11078.473198 eV Total energy + Delta-G solvation = -2442.088103 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85481 -37.97227 -35.78345 -33.37758 -32.05558 -29.42036 -28.63719 -25.40134 -23.74062 -21.24354 -20.58258 -19.59077 -17.65466 -17.18477 -15.80700 -15.27351 -14.62649 -14.20372 -14.15726 -13.13020 -13.02580 -12.83126 -12.65256 -12.44568 -11.65827 -11.21964 -10.87547 -10.62876 -10.22835 -10.10130 -9.71945 -9.31573 -9.00295 -8.64278 -7.36909 -7.09302 -6.92998 -4.53034 1.58891 2.68505 3.00047 3.01702 3.13252 3.20531 3.78809 3.81800 4.06730 4.47977 5.11878 5.46264 5.48487 5.79326 6.05607 6.46880 6.51225 6.61568 6.64264 6.92555 7.22254 7.45136 7.59640 7.81240 7.86986 8.15841 8.31288 8.47209 8.65621 8.68863 8.88925 9.96373 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.027395 B = 0.011448 C = 0.008244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.854544 B = 2445.348418 C = 3395.682035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.446 4.446 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.149 4.149 11 C 0.100 3.900 12 N -0.521 5.521 13 C 0.250 3.750 14 N -0.617 5.617 15 H 0.409 0.591 16 C -0.064 4.064 17 C -0.027 4.027 18 C -0.269 4.269 19 C 0.393 3.607 20 O -0.522 6.522 21 H 0.288 0.712 22 H 0.132 0.868 23 H 0.199 0.801 24 H 0.104 0.896 25 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 -2.960 -1.882 3.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.106 0.894 9 C 0.134 3.866 10 C -0.171 4.171 11 C -0.015 4.015 12 N -0.244 5.244 13 C -0.038 4.038 14 N -0.233 5.233 15 H 0.245 0.755 16 C -0.167 4.167 17 C -0.048 4.048 18 C -0.272 4.272 19 C 0.260 3.740 20 O -0.403 6.403 21 H 0.099 0.901 22 H 0.150 0.850 23 H 0.216 0.784 24 H 0.122 0.878 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.269 -2.617 -2.045 3.555 hybrid contribution 0.486 -0.336 0.388 0.707 sum -0.784 -2.953 -1.657 3.476 Atomic orbital electron populations 1.69727 1.07817 1.30203 1.31554 1.26061 0.94827 1.01764 0.92083 0.86238 0.80105 0.79512 0.80280 1.18473 1.20102 1.18651 1.19520 0.97547 0.90499 1.39884 0.89406 1.18280 0.90500 0.90318 0.87506 1.20477 0.98876 0.94662 1.03124 1.19192 0.92495 0.93290 0.96495 1.70481 1.17826 1.12567 1.23535 1.24986 0.94067 0.89510 0.95216 1.42747 1.25724 1.08862 1.45969 0.75503 1.18513 0.98831 0.89466 1.09926 1.19719 0.91940 0.97569 0.95567 1.21293 1.02895 0.93582 1.09410 1.23484 0.83011 0.91638 0.75822 1.90396 1.65880 1.35190 1.48865 0.90073 0.85014 0.78435 0.87767 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.76 10.87 55.56 0.60 -18.16 15 2 C 0.07 1.72 5.19 -17.29 -0.09 1.63 15 3 Si 0.92 17.14 29.59 -169.99 -5.03 12.11 15 4 H -0.26 -4.86 7.11 56.52 0.40 -4.45 15 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 15 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 7 C -0.45 -10.70 8.50 -37.89 -0.32 -11.02 15 8 H 0.09 1.92 6.63 -52.49 -0.35 1.58 15 9 C 0.14 3.50 5.73 -104.70 -0.60 2.90 15 10 C -0.15 -3.89 8.74 -38.45 -0.34 -4.22 15 11 C 0.10 2.46 7.17 -84.61 -0.61 1.85 15 12 N -0.52 -11.67 11.28 -12.04 -0.14 -11.81 15 13 C 0.25 4.27 12.95 -89.93 -1.16 3.11 15 14 N -0.62 -10.64 6.22 -11.68 -0.07 -10.71 15 15 H 0.41 5.29 8.96 -40.82 -0.37 4.92 15 16 C -0.06 -1.43 7.26 -83.80 -0.61 -2.04 15 17 C -0.03 -0.60 9.60 -39.00 -0.37 -0.98 15 18 C -0.27 -6.37 6.05 -102.72 -0.62 -6.99 15 19 C 0.39 8.59 11.02 33.99 0.37 8.96 15 20 O -0.52 -12.22 17.16 5.47 0.09 -12.13 15 21 H 0.29 6.39 8.29 -40.82 -0.34 6.05 15 22 H 0.13 3.58 6.13 -52.49 -0.32 3.26 15 23 H 0.20 2.21 8.06 -52.48 -0.42 1.78 15 24 H 0.10 2.20 7.63 -52.49 -0.40 1.80 15 25 H 0.09 1.75 6.64 -52.49 -0.35 1.40 15 LS Contribution 230.99 15.07 3.48 3.48 Total: -1.00 -30.03 230.99 -6.75 -36.78 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -1.34 Total: 7.23 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -4.35 Total: -6.79 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.40 Total: -40.68 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.03 -6.75 -36.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306881223.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.725 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds