Wall clock time and date at job start Mon Mar 30 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48494 * 109.47265 * 274.69406 * 3 2 1 5 5 H 1.48505 * 109.47285 * 34.69766 * 3 2 1 6 6 H 1.48505 * 109.47055 * 154.69291 * 3 2 1 7 7 C 1.40036 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99741 * 197.79534 * 7 2 1 9 9 C 1.40814 * 119.99811 * 17.79344 * 7 2 1 10 10 C 1.40313 * 120.57566 * 24.26963 * 9 7 2 11 11 C 1.39465 * 119.98201 * 180.02562 * 10 9 7 12 12 C 1.46989 * 119.50451 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00146 * 359.97438 * 12 11 10 14 14 C 1.40046 * 120.99266 * 359.97438 * 11 10 9 15 15 C 1.38315 * 120.81616 * 0.02562 * 14 11 10 16 16 N 1.38277 * 133.98566 * 179.97438 * 15 14 11 17 17 H 0.97002 * 126.40439 * 359.97427 * 16 15 14 18 18 C 1.35137 * 107.17835 * 179.97438 * 16 15 14 19 19 N 1.30579 * 110.11303 * 0.02562 * 18 16 15 20 20 C 1.34152 * 109.77755 * 0.02562 * 19 18 16 21 21 H 0.97004 * 120.00241 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.01225 * 0.04238 * 10 9 7 23 23 H 1.07999 * 120.00207 * 179.97438 * 12 11 10 24 24 H 1.08005 * 119.58919 * 179.75006 * 14 11 10 25 25 H 1.07997 * 124.94513 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3904 2.1037 -1.3953 5 1 1.4927 2.6220 0.7970 6 1 3.5858 1.4135 0.5985 7 6 2.0083 -1.2128 0.0005 8 1 3.0495 -1.2350 0.2864 9 6 1.3546 -2.4032 -0.3716 10 6 0.2238 -2.3671 -1.2015 11 6 -0.4142 -3.5537 -1.5620 12 6 -1.5983 -3.5037 -2.4315 13 8 -2.0138 -2.4360 -2.8295 14 6 0.0562 -4.7922 -1.1080 15 6 1.1676 -4.8708 -0.2884 16 7 1.8513 -5.9161 0.3049 17 1 1.6364 -6.8593 0.2325 18 6 2.8747 -5.3779 1.0042 19 7 2.8669 -4.0778 0.8826 20 6 1.8430 -3.7010 0.1019 21 1 -0.4851 0.8401 0.0004 22 1 -0.1522 -1.4209 -1.5614 23 1 -2.0985 -4.4177 -2.7159 24 1 -0.4578 -5.6968 -1.3978 25 1 3.5942 -5.9410 1.5800 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306890581.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:52 Heat of formation + Delta-G solvation = 6.058373 kcal Electronic energy + Delta-G solvation = -13549.854239 eV Core-core repulsion = 11106.990703 eV Total energy + Delta-G solvation = -2442.863536 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.47098 -39.90778 -37.47103 -35.42272 -33.59561 -31.20120 -30.06292 -27.30068 -25.12565 -23.32031 -22.03342 -21.40456 -19.51027 -18.35401 -17.35836 -17.14042 -16.53617 -15.88226 -15.74102 -15.05575 -14.94973 -14.66824 -14.17478 -13.70483 -13.37153 -12.88956 -12.51349 -12.20421 -11.97815 -11.88892 -11.34981 -10.92236 -10.63352 -10.43866 -9.03555 -8.97325 -8.70457 -6.28765 -0.04105 0.99813 1.34387 1.48542 1.50308 1.62315 2.15859 2.41082 2.42419 2.70954 3.65822 3.66287 3.89193 4.26776 4.66290 4.74784 4.87260 4.93153 5.03647 5.23138 5.44021 5.84395 5.88457 5.94313 6.18801 6.48699 6.71120 6.78763 6.81528 7.00592 7.47295 8.17962 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.013171 C = 0.008563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.884062 B = 2125.363161 C = 3268.924070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.456 4.456 8 H 0.075 0.925 9 C 0.111 3.889 10 C -0.192 4.192 11 C -0.149 4.149 12 C 0.394 3.606 13 O -0.515 6.515 14 C -0.197 4.197 15 C 0.054 3.946 16 N -0.585 5.585 17 H 0.436 0.564 18 C 0.215 3.785 19 N -0.533 5.533 20 C -0.050 4.050 21 H 0.293 0.707 22 H 0.106 0.894 23 H 0.154 0.846 24 H 0.147 0.853 25 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.213 -9.581 -0.259 9.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.189 4.189 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.484 4.484 8 H 0.093 0.907 9 C 0.107 3.893 10 C -0.215 4.215 11 C -0.152 4.152 12 C 0.257 3.743 13 O -0.392 6.392 14 C -0.220 4.220 15 C -0.056 4.056 16 N -0.199 5.199 17 H 0.278 0.722 18 C -0.070 4.070 19 N -0.253 5.253 20 C -0.170 4.170 21 H 0.104 0.896 22 H 0.124 0.876 23 H 0.170 0.830 24 H 0.164 0.836 25 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.360 -8.250 -0.069 8.362 hybrid contribution -0.225 -0.143 -0.106 0.287 sum 1.135 -8.393 -0.175 8.471 Atomic orbital electron populations 1.69874 1.09190 1.31233 1.32348 1.26973 0.95579 1.05009 0.91365 0.85092 0.79138 0.75246 0.79706 1.18386 1.18501 1.18041 1.19773 0.98274 0.92171 1.38188 0.90718 1.18136 0.91789 0.89735 0.89661 1.21126 0.99953 0.97214 1.03195 1.20581 0.99225 0.93535 1.01814 1.24664 0.81726 0.93213 0.74731 1.90456 1.63331 1.37178 1.48191 1.19448 0.99073 0.96750 1.06726 1.18794 0.97873 0.88145 1.00782 1.42629 1.25733 1.08906 1.42609 0.72244 1.25760 0.93381 0.89434 0.98456 1.69610 1.22723 1.12772 1.20182 1.20477 0.98027 0.94150 1.04339 0.89593 0.87598 0.82982 0.83551 0.72993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.26 10.95 21.84 0.24 -44.02 15 2 C 0.03 1.49 5.15 85.28 0.44 1.93 15 3 Si 0.99 40.20 29.60 68.60 2.03 42.23 15 4 H -0.26 -10.18 7.11 99.48 0.71 -9.48 15 5 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 7 C -0.46 -26.33 9.09 23.34 0.21 -26.12 15 8 H 0.07 4.33 7.91 -2.91 -0.02 4.31 15 9 C 0.11 6.38 5.73 -19.98 -0.11 6.27 15 10 C -0.19 -10.66 8.23 23.07 0.19 -10.48 15 11 C -0.15 -6.74 5.85 -20.25 -0.12 -6.86 15 12 C 0.39 14.91 11.41 70.12 0.80 15.71 15 13 O -0.51 -24.00 17.09 -3.04 -0.05 -24.05 15 14 C -0.20 -7.68 9.73 22.73 0.22 -7.46 15 15 C 0.05 2.29 7.28 38.72 0.28 2.57 15 16 N -0.58 -17.74 6.21 -191.64 -1.19 -18.93 15 17 H 0.44 8.47 8.96 -92.71 -0.83 7.64 15 18 C 0.21 6.96 12.95 180.21 2.33 9.29 15 19 N -0.53 -24.90 11.22 -187.73 -2.11 -27.01 15 20 C -0.05 -2.57 7.19 41.53 0.30 -2.28 15 21 H 0.29 14.59 8.30 -92.71 -0.77 13.82 15 22 H 0.11 6.40 5.67 -2.91 -0.02 6.38 15 23 H 0.15 3.68 8.06 -2.91 -0.02 3.66 15 24 H 0.15 4.13 8.06 -2.91 -0.02 4.11 15 25 H 0.25 4.84 8.06 -2.91 -0.02 4.82 15 Total: -1.00 -76.53 234.03 3.88 -72.65 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.41 Total: 16.55 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.54 Total: -17.42 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -3.06 Total: -89.96 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -76.53 3.88 -72.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306890581.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.712 kcal (2) G-P(sol) polarization free energy of solvation -76.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds