Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47279 * 271.07364 * 3 2 1 5 5 C 1.50694 * 109.47848 * 179.97438 * 4 3 2 6 6 C 1.38210 * 119.99044 * 265.02765 * 5 4 3 7 7 C 1.38857 * 120.62647 * 179.97438 * 6 5 4 8 8 C 1.36479 * 120.59658 * 359.73629 * 7 6 5 9 9 C 1.40697 * 119.95455 * 0.51502 * 8 7 6 10 10 C 1.41046 * 120.30622 * 179.76339 * 9 8 7 11 11 H 1.07998 * 119.99473 * 154.26257 * 10 9 8 12 12 C 1.39923 * 120.00236 * 333.97874 * 10 9 8 13 13 N 1.30876 * 120.00207 * 343.14988 * 12 10 9 14 14 Si 1.86803 * 119.99949 * 163.14528 * 12 10 9 15 15 H 1.48495 * 109.46886 * 60.00305 * 14 12 10 16 16 H 1.48497 * 109.47040 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46959 * 300.00247 * 14 12 10 18 18 C 1.38714 * 119.98786 * 84.99630 * 5 4 3 19 19 N 1.38747 * 120.29176 * 0.02562 * 18 5 4 20 20 H 1.09007 * 109.47175 * 151.07914 * 3 2 1 21 21 H 1.08997 * 109.47127 * 31.07623 * 3 2 1 22 22 H 1.09007 * 109.47011 * 59.99881 * 4 3 2 23 23 H 1.09010 * 109.47133 * 300.00350 * 4 3 2 24 24 H 1.08000 * 119.68155 * 359.95477 * 6 5 4 25 25 H 1.08001 * 119.69651 * 180.02562 * 7 6 5 26 26 H 1.08006 * 120.02623 * 180.26098 * 8 7 6 27 27 H 0.97003 * 120.00337 * 179.97438 * 13 12 10 28 28 H 0.96999 * 119.99907 * 180.02562 * 19 18 5 29 29 H 0.97005 * 119.99742 * 0.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0261 1.4422 5 6 4.6250 -0.0261 1.4424 6 6 5.3158 -1.2204 1.5240 7 6 6.7043 -1.2357 1.5246 8 6 7.4120 -0.0719 1.4393 9 6 6.7339 1.1584 1.3605 10 6 7.4578 2.3660 1.2770 11 1 7.0101 3.2331 0.8143 12 6 8.7538 2.4424 1.7990 13 7 9.1748 1.5333 2.6411 14 14 9.8832 3.8419 1.2938 15 1 9.2663 5.1379 1.6744 16 1 11.1914 3.6950 1.9811 17 1 10.0901 3.8049 -0.1764 18 6 5.3183 1.1725 1.3599 19 7 4.6304 2.3747 1.2776 20 1 2.9709 0.9004 -0.4970 21 1 2.9717 -0.8793 -0.5304 22 1 2.7550 -0.9258 1.9393 23 1 2.7542 0.8539 1.9727 24 1 4.7705 -2.1503 1.5882 25 1 7.2289 -2.1776 1.5886 26 1 8.4918 -0.0948 1.4363 27 1 10.0733 1.5860 3.0027 28 1 5.1195 3.2103 1.2197 29 1 3.6603 2.3794 1.2780 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306942292.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = 15.545401 kcal Electronic energy + Delta-G solvation = -13543.526514 eV Core-core repulsion = 11236.907461 eV Total energy + Delta-G solvation = -2306.619053 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.93795 -37.77736 -35.82566 -34.81488 -33.91843 -30.73613 -29.12767 -26.79980 -25.22172 -22.27910 -21.33943 -18.70704 -18.22223 -17.67999 -17.39758 -16.43363 -15.66960 -15.54034 -14.77201 -14.33025 -14.29733 -14.21776 -13.54958 -13.44641 -13.36487 -12.93326 -12.72411 -12.56457 -12.33741 -12.08354 -11.71182 -11.24138 -11.15575 -10.89849 -10.86715 -9.03533 -8.49083 -7.94053 -5.95739 1.12764 1.40697 1.44232 1.53130 1.61555 1.86526 1.86794 2.29907 2.91374 3.16203 3.70763 3.91773 4.27580 4.45551 4.49156 4.75803 4.87225 4.98138 5.05202 5.24291 5.29330 5.47535 5.61965 5.84762 6.06371 6.14533 6.42898 6.52051 6.64899 6.79526 7.04234 7.14366 7.40750 7.63115 8.54717 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.045062 B = 0.007416 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.223849 B = 3774.563402 C = 4257.227964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.242 3.758 3 C -0.015 4.015 4 C -0.048 4.048 5 C -0.151 4.151 6 C -0.175 4.175 7 C -0.165 4.165 8 C -0.164 4.164 9 C 0.024 3.976 10 C -0.493 4.493 11 H 0.077 0.923 12 C 0.031 3.969 13 N -0.842 5.842 14 Si 0.970 3.030 15 H -0.261 1.261 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.128 3.872 19 N -0.871 5.871 20 H 0.117 0.883 21 H 0.128 0.872 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.119 0.881 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.278 0.722 28 H 0.392 0.608 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 -0.044 -3.325 5.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.074 4.074 3 C -0.055 4.055 4 C -0.087 4.087 5 C -0.157 4.157 6 C -0.194 4.194 7 C -0.185 4.185 8 C -0.185 4.185 9 C 0.019 3.981 10 C -0.525 4.525 11 H 0.095 0.905 12 C -0.181 4.181 13 N -0.471 5.471 14 Si 0.793 3.207 15 H -0.185 1.185 16 H -0.205 1.205 17 H -0.190 1.190 18 C 0.024 3.976 19 N -0.414 5.414 20 H 0.135 0.865 21 H 0.146 0.854 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.137 0.863 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.220 0.780 29 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.390 -0.145 -3.179 7.139 hybrid contribution 1.317 0.779 0.078 1.532 sum -5.073 0.634 -3.101 5.979 Atomic orbital electron populations 1.81215 1.14643 1.11417 1.10716 1.29696 0.95467 0.91011 0.91197 1.19459 0.78898 1.07407 0.99702 1.20105 0.90918 1.03195 0.94496 1.18885 0.94131 0.91418 1.11288 1.20440 0.92994 0.96718 1.09284 1.20465 0.95027 0.96622 1.06362 1.20753 0.98617 0.92380 1.06767 1.17530 0.90412 0.93787 0.96379 1.19384 0.99458 0.97946 1.35700 0.90485 1.26528 0.99745 0.99167 0.92630 1.69925 1.18643 1.35385 1.23104 0.85429 0.77245 0.78820 0.79189 1.18518 1.20465 1.18971 1.17891 0.90748 0.86774 1.02139 1.41900 1.07728 1.05277 1.86452 0.86458 0.85438 0.90133 0.91278 0.86298 0.88721 0.89417 0.91132 0.77975 0.77700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -14.69 18.54 20.00 0.37 -14.32 15 2 C 0.24 5.71 15.43 89.44 1.38 7.09 15 3 C -0.01 -0.29 5.68 28.79 0.16 -0.13 15 4 C -0.05 -1.21 4.73 29.85 0.14 -1.07 15 5 C -0.15 -5.35 5.15 -19.76 -0.10 -5.46 15 6 C -0.17 -6.58 9.67 22.41 0.22 -6.36 15 7 C -0.16 -7.27 9.96 22.01 0.22 -7.05 15 8 C -0.16 -8.36 8.63 22.46 0.19 -8.17 15 9 C 0.02 1.17 5.57 -21.17 -0.12 1.06 15 10 C -0.49 -24.88 8.50 23.37 0.20 -24.68 15 11 H 0.08 3.61 6.70 -2.91 -0.02 3.59 15 12 C 0.03 1.55 5.15 85.24 0.44 1.99 15 13 N -0.84 -44.53 11.00 21.83 0.24 -44.29 15 14 Si 0.97 38.14 29.59 68.60 2.03 40.17 15 15 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 16 H -0.28 -10.78 7.11 99.48 0.71 -10.08 15 17 H -0.27 -10.23 7.11 99.48 0.71 -9.52 15 18 C 0.13 5.25 6.77 38.98 0.26 5.51 15 19 N -0.87 -29.02 8.89 -50.39 -0.45 -29.47 15 20 H 0.12 2.23 8.14 -2.38 -0.02 2.21 15 21 H 0.13 2.22 8.14 -2.39 -0.02 2.20 15 22 H 0.08 1.85 8.05 -2.38 -0.02 1.83 15 23 H 0.07 1.66 6.82 -2.38 -0.02 1.65 15 24 H 0.12 3.70 8.06 -2.91 -0.02 3.68 15 25 H 0.09 3.82 8.06 -2.91 -0.02 3.80 15 26 H 0.09 4.84 6.23 -2.91 -0.02 4.83 15 27 H 0.28 13.65 8.30 -92.71 -0.77 12.88 15 28 H 0.39 13.38 7.06 -92.71 -0.65 12.72 15 29 H 0.39 10.34 6.93 -92.70 -0.64 9.70 15 Total: -1.00 -59.88 257.07 5.09 -54.79 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.10 Total: 30.38 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 3.00 Total: -37.27 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: 0.16 Total: -88.08 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -59.88 5.09 -54.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306942292.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.338 kcal (2) G-P(sol) polarization free energy of solvation -59.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds