Wall clock time and date at job start Mon Mar 30 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46692 * 133.49211 * 3 2 1 5 5 C 1.50701 * 109.47040 * 179.97438 * 4 3 2 6 6 C 1.38902 * 119.68301 * 90.00086 * 5 4 3 7 7 C 1.36453 * 120.59508 * 180.02562 * 6 5 4 8 8 C 1.40726 * 119.94881 * 359.97438 * 7 6 5 9 9 C 1.41049 * 120.30271 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00162 * 206.12199 * 9 8 7 11 11 C 1.39925 * 120.00243 * 26.12364 * 9 8 7 12 12 N 1.30890 * 119.99697 * 16.45038 * 11 9 8 13 13 Si 1.86791 * 120.00261 * 196.44909 * 11 9 8 14 14 H 1.48504 * 109.47455 * 265.18540 * 13 11 9 15 15 H 1.48503 * 109.47106 * 25.18817 * 13 11 9 16 16 H 1.48508 * 109.47252 * 145.18625 * 13 11 9 17 17 C 1.41540 * 119.39093 * 0.27766 * 8 7 6 18 18 N 1.38732 * 120.29386 * 179.72130 * 17 8 7 19 19 C 1.38163 * 119.68952 * 269.97936 * 5 4 3 20 20 H 1.08994 * 109.47363 * 13.49528 * 3 2 1 21 21 H 1.08995 * 109.47205 * 253.48780 * 3 2 1 22 22 H 1.08999 * 109.47390 * 59.99976 * 4 3 2 23 23 H 1.08999 * 109.47414 * 299.99890 * 4 3 2 24 24 H 1.07995 * 119.70296 * 359.97438 * 6 5 4 25 25 H 1.07995 * 120.02211 * 179.97438 * 7 6 5 26 26 H 0.96994 * 119.99915 * 180.02562 * 12 11 9 27 27 H 0.96993 * 120.00040 * 0.02562 * 18 17 8 28 28 H 0.97006 * 119.99557 * 180.02562 * 18 17 8 29 29 H 1.08006 * 119.98572 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1175 0.9937 -1.0465 5 6 4.6245 0.9949 -1.0461 6 6 5.3133 0.1199 -1.8764 7 6 6.6776 0.1048 -1.8906 8 6 7.3986 0.9819 -1.0592 9 6 8.8090 0.9731 -1.0683 10 1 9.3567 1.2956 -0.1951 11 6 9.4987 0.5465 -2.2086 12 7 8.8765 0.4644 -3.3572 13 14 11.3073 0.0942 -2.0917 14 1 12.1364 1.2703 -2.4588 15 1 11.6249 -0.3208 -0.7017 16 1 11.5985 -1.0264 -3.0217 17 6 6.6954 1.8692 -0.2097 18 7 7.3873 2.7378 0.6219 19 6 5.3080 1.8666 -0.2203 20 1 2.9719 -0.9984 -0.2398 21 1 2.9713 0.2929 0.9852 22 1 2.7537 1.9928 -0.8068 23 1 2.7543 0.7016 -2.0318 24 1 4.7640 -0.5552 -2.5158 25 1 7.2037 -0.5796 -2.5395 26 1 9.3544 0.1683 -4.1476 27 1 8.3572 2.7390 0.6226 28 1 6.9010 3.3438 1.2026 29 1 4.7619 2.5426 0.4211 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307116365.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:53 Heat of formation + Delta-G solvation = 12.714754 kcal Electronic energy + Delta-G solvation = -13341.043850 eV Core-core repulsion = 11034.302051 eV Total energy + Delta-G solvation = -2306.741799 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74968 -37.81535 -35.91756 -35.12648 -33.37442 -30.77883 -29.16161 -27.30731 -24.47880 -22.51710 -21.30257 -18.94736 -18.29459 -17.51258 -16.96826 -16.28180 -15.84982 -15.66558 -14.77934 -14.42008 -14.26345 -14.05021 -13.61529 -13.53151 -13.26610 -12.88366 -12.70560 -12.58603 -12.39545 -12.02979 -11.65409 -11.28113 -11.16891 -10.88585 -10.74986 -9.02541 -8.49994 -7.97852 -5.94993 1.09631 1.43620 1.48692 1.53358 1.57448 1.88974 1.89546 2.29516 2.90265 3.20925 3.71926 3.93534 4.36693 4.51798 4.58493 4.77130 4.89701 5.01385 5.11130 5.28545 5.35854 5.49298 5.58192 5.85517 6.01059 6.16794 6.45708 6.52749 6.67833 6.81217 7.04197 7.13227 7.40906 7.63836 8.54064 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.051246 B = 0.006561 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.250012 B = 4266.693599 C = 4632.623243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.243 3.757 3 C -0.014 4.014 4 C -0.046 4.046 5 C -0.144 4.144 6 C -0.150 4.150 7 C -0.160 4.160 8 C 0.022 3.978 9 C -0.493 4.493 10 H 0.072 0.928 11 C 0.031 3.969 12 N -0.840 5.840 13 Si 0.970 3.030 14 H -0.269 1.269 15 H -0.260 1.260 16 H -0.275 1.275 17 C 0.110 3.890 18 N -0.876 5.876 19 C -0.178 4.178 20 H 0.122 0.878 21 H 0.127 0.873 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.279 0.721 27 H 0.391 0.609 28 H 0.394 0.606 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 0.519 5.075 5.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.073 4.073 3 C -0.054 4.054 4 C -0.085 4.085 5 C -0.145 4.145 6 C -0.170 4.170 7 C -0.181 4.181 8 C 0.017 3.983 9 C -0.525 4.525 10 H 0.090 0.910 11 C -0.181 4.181 12 N -0.469 5.469 13 Si 0.793 3.207 14 H -0.194 1.194 15 H -0.184 1.184 16 H -0.200 1.200 17 C 0.007 3.993 18 N -0.418 5.418 19 C -0.202 4.202 20 H 0.140 0.860 21 H 0.144 0.856 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.120 0.880 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.219 0.781 28 H 0.222 0.778 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.134 0.423 4.801 6.350 hybrid contribution 1.637 -0.007 -0.197 1.649 sum -2.497 0.416 4.604 5.254 Atomic orbital electron populations 1.81206 1.14797 1.11288 1.11268 1.29824 0.95615 0.90934 0.90933 1.19517 0.78625 1.03784 1.03479 1.20139 0.91028 0.98968 0.98350 1.19011 0.94094 1.00488 1.00940 1.20367 0.93731 1.01448 1.01485 1.20760 0.93722 1.00626 1.03036 1.17575 0.93705 0.92691 0.94342 1.19392 0.92065 1.41491 0.99523 0.90958 1.26517 1.04189 0.93192 0.94182 1.69923 1.39862 1.36985 1.00118 0.85370 0.77781 0.78467 0.79081 1.19438 1.18425 1.20026 1.18185 0.91680 0.93203 0.96241 1.41820 1.08486 1.44020 1.47465 1.20216 0.91224 1.04015 1.04701 0.85999 0.85555 0.90743 0.91309 0.87989 0.89155 0.91080 0.78098 0.77800 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -15.29 18.54 20.01 0.37 -14.92 15 2 C 0.24 5.90 15.43 89.44 1.38 7.28 15 3 C -0.01 -0.29 5.68 28.79 0.16 -0.12 15 4 C -0.05 -1.17 5.28 29.85 0.16 -1.01 15 5 C -0.14 -5.06 5.15 -19.72 -0.10 -5.17 15 6 C -0.15 -6.25 9.61 22.01 0.21 -6.04 15 7 C -0.16 -8.00 8.62 22.46 0.19 -7.81 15 8 C 0.02 1.08 5.57 -21.17 -0.12 0.97 15 9 C -0.49 -25.23 8.49 23.37 0.20 -25.03 15 10 H 0.07 3.50 6.70 -2.91 -0.02 3.48 15 11 C 0.03 1.55 5.15 85.24 0.44 1.99 15 12 N -0.84 -44.17 10.98 21.83 0.24 -43.93 15 13 Si 0.97 38.26 29.59 68.60 2.03 40.29 15 14 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 15 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 16 H -0.28 -10.62 7.11 99.48 0.71 -9.91 15 17 C 0.11 4.72 6.79 38.99 0.26 4.99 15 18 N -0.88 -31.44 8.98 -50.40 -0.45 -31.89 15 19 C -0.18 -6.58 9.52 22.37 0.21 -6.37 15 20 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 21 H 0.13 2.17 8.14 -2.39 -0.02 2.15 15 22 H 0.07 1.75 8.08 -2.39 -0.02 1.73 15 23 H 0.07 1.72 8.08 -2.39 -0.02 1.70 15 24 H 0.10 3.78 8.06 -2.91 -0.02 3.76 15 25 H 0.09 4.88 6.23 -2.91 -0.02 4.86 15 26 H 0.28 13.51 8.30 -92.71 -0.77 12.74 15 27 H 0.39 14.20 7.06 -92.71 -0.65 13.55 15 28 H 0.39 11.24 8.84 -92.70 -0.82 10.42 15 29 H 0.12 3.64 8.06 -2.91 -0.02 3.62 15 Total: -1.00 -60.25 260.41 4.91 -55.34 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.28 Total: 31.44 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 3.00 Total: -36.33 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: 0.16 Total: -90.74 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -60.25 4.91 -55.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307116365.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.056 kcal (2) G-P(sol) polarization free energy of solvation -60.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds