Wall clock time and date at job start Mon Mar 30 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30528 * 1 3 3 Si 1.86809 * 119.99720 * 2 1 4 4 H 1.48498 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47064 * 300.00298 * 3 2 1 6 6 H 1.48498 * 109.46878 * 60.00404 * 3 2 1 7 7 C 1.40352 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99678 * 179.97438 * 7 2 1 9 9 C 1.41798 * 120.00024 * 359.97438 * 7 2 1 10 10 O 1.21769 * 120.00306 * 0.02562 * 9 7 2 11 11 C 1.47830 * 119.99946 * 179.97438 * 9 7 2 12 12 C 1.39756 * 120.15294 * 354.03870 * 11 9 7 13 13 C 1.37871 * 119.84089 * 180.02562 * 12 11 9 14 14 C 1.38466 * 120.15647 * 359.74766 * 13 12 11 15 15 C 1.38422 * 120.30656 * 0.50566 * 14 13 12 16 16 C 1.37903 * 120.15777 * 359.49691 * 15 14 13 17 17 C 1.50708 * 120.07797 * 180.27500 * 16 15 14 18 18 C 1.52991 * 117.49861 * 1.57645 * 17 16 15 19 19 C 1.52994 * 60.00106 * 252.51300 * 18 17 16 20 20 H 0.96992 * 120.00189 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.08150 * 359.97438 * 12 11 9 22 22 H 1.08003 * 119.92231 * 179.97438 * 13 12 11 23 23 H 1.07990 * 119.84494 * 180.25207 * 14 13 12 24 24 H 1.07998 * 119.91753 * 179.76508 * 15 14 13 25 25 H 1.09004 * 115.54772 * 147.28447 * 17 16 15 26 26 H 1.09003 * 117.50107 * 0.02562 * 18 17 16 27 27 H 1.09002 * 117.49913 * 145.02060 * 18 17 16 28 28 H 1.09000 * 117.49991 * 252.51554 * 19 18 17 29 29 H 1.08998 * 117.50091 * 107.48771 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6179 0.0000 4 1 3.6992 1.3465 -0.0006 5 1 1.8804 2.3965 -1.2124 6 1 1.8805 2.3964 1.2125 7 6 2.0071 -1.2155 -0.0005 8 1 3.0871 -1.2154 -0.0010 9 6 1.2981 -2.4435 -0.0005 10 8 0.0804 -2.4436 -0.0005 11 6 2.0373 -3.7237 -0.0017 12 6 3.4291 -3.7306 -0.1283 13 6 4.1120 -4.9283 -0.1291 14 6 3.4226 -6.1222 0.0004 15 6 2.0437 -6.1230 0.1209 16 6 1.3477 -4.9325 0.1232 17 6 -0.1531 -4.9351 0.2608 18 6 -0.8444 -6.2892 0.4315 19 6 -0.9669 -5.5291 -0.8906 20 1 -0.4850 0.8400 0.0004 21 1 3.9684 -2.8000 -0.2261 22 1 5.1875 -4.9352 -0.2273 23 1 3.9629 -7.0572 0.0032 24 1 1.5120 -7.0580 0.2177 25 1 -0.5781 -4.0823 0.7902 26 1 -0.2137 -7.1782 0.4447 27 1 -1.7245 -6.3277 1.0734 28 1 -1.9276 -5.0673 -1.1185 29 1 -0.4169 -5.9179 -1.7476 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307117065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:48 Heat of formation + Delta-G solvation = 6.745370 kcal Electronic energy + Delta-G solvation = -13877.737026 eV Core-core repulsion = 11538.443624 eV Total energy + Delta-G solvation = -2339.293402 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08158 -36.21300 -35.94266 -32.71103 -30.42488 -29.76810 -26.82451 -23.14347 -22.73832 -21.71801 -19.91607 -19.27256 -16.72417 -15.99341 -15.37454 -14.72525 -14.19121 -13.87235 -13.46587 -13.15911 -12.66696 -12.55347 -11.52227 -11.47937 -11.42240 -11.01692 -10.97495 -10.68177 -10.55588 -10.35646 -10.04908 -9.95392 -9.64244 -9.00230 -8.08229 -7.76510 -7.33359 -6.28251 -4.91601 1.87805 2.06789 3.02582 3.11953 3.16251 3.99244 4.05519 4.47558 4.76035 5.25030 5.45963 5.56227 5.58211 5.70946 5.73939 5.85230 6.07436 6.10781 6.22299 6.31792 6.40424 6.63833 6.74453 6.76915 7.01793 7.09922 7.21222 7.31028 7.49010 7.73291 8.04158 8.77615 8.83243 10.29361 10.51648 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.032417 B = 0.010100 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.529701 B = 2771.566457 C = 3559.703178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.080 3.920 3 Si 0.905 3.095 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.387 3.613 10 O -0.530 6.530 11 C -0.101 4.101 12 C -0.093 4.093 13 C -0.143 4.143 14 C -0.130 4.130 15 C -0.139 4.139 16 C -0.028 4.028 17 C -0.093 4.093 18 C -0.201 4.201 19 C -0.163 4.163 20 H 0.273 0.727 21 H 0.128 0.872 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.145 0.855 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -6.819 -0.002 7.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.092 0.908 9 C 0.283 3.717 10 O -0.420 6.420 11 C -0.102 4.102 12 C -0.111 4.111 13 C -0.161 4.161 14 C -0.149 4.149 15 C -0.157 4.157 16 C -0.028 4.028 17 C -0.111 4.111 18 C -0.238 4.238 19 C -0.200 4.200 20 H 0.084 0.916 21 H 0.146 0.854 22 H 0.130 0.870 23 H 0.128 0.872 24 H 0.132 0.868 25 H 0.162 0.838 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.069 -6.771 -0.006 7.434 hybrid contribution 0.729 0.693 -0.058 1.008 sum 3.797 -6.077 -0.064 7.167 Atomic orbital electron populations 1.69953 1.07494 1.27984 1.30911 1.25991 0.94636 1.00956 0.92708 0.86338 0.80868 0.81353 0.78524 1.18384 1.19853 1.19841 1.20987 0.94983 0.91634 1.47163 0.90810 1.18128 0.88499 0.85734 0.79298 1.90404 1.14868 1.87877 1.48809 1.21715 0.94128 0.97247 0.97148 1.21528 0.94064 0.97708 0.97823 1.21029 0.99127 0.92927 1.03051 1.21008 0.94170 0.97449 1.02244 1.20920 0.94131 0.97411 1.03247 1.19419 0.93789 0.92270 0.97354 1.21429 0.90372 0.96506 1.02753 1.23083 1.03218 0.96408 1.01113 1.22756 1.01775 1.03596 0.91852 0.91569 0.85386 0.86990 0.87192 0.86814 0.83772 0.89465 0.89282 0.89012 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.78 11.73 55.57 0.65 -20.13 15 2 C 0.08 2.13 5.50 -17.31 -0.10 2.04 15 3 Si 0.91 19.12 29.56 -169.99 -5.03 14.09 15 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 7 C -0.52 -14.09 8.85 -37.43 -0.33 -14.42 15 8 H 0.07 1.84 6.07 -52.49 -0.32 1.52 15 9 C 0.39 10.83 6.88 -34.30 -0.24 10.59 15 10 O -0.53 -16.08 11.88 5.13 0.06 -16.02 15 11 C -0.10 -2.42 5.88 -104.85 -0.62 -3.04 15 12 C -0.09 -1.93 9.43 -39.15 -0.37 -2.30 15 13 C -0.14 -2.50 10.03 -39.63 -0.40 -2.90 15 14 C -0.13 -2.18 10.05 -39.43 -0.40 -2.58 15 15 C -0.14 -2.54 9.37 -39.64 -0.37 -2.92 15 16 C -0.03 -0.61 5.62 -104.19 -0.59 -1.19 15 17 C -0.09 -1.98 4.74 -91.77 -0.43 -2.41 15 18 C -0.20 -3.36 9.87 -26.74 -0.26 -3.62 15 19 C -0.16 -3.01 10.22 -26.74 -0.27 -3.28 15 20 H 0.27 6.93 8.29 -40.82 -0.34 6.59 15 21 H 0.13 2.55 6.25 -52.49 -0.33 2.22 15 22 H 0.11 1.60 8.06 -52.48 -0.42 1.17 15 23 H 0.11 1.48 8.06 -52.49 -0.42 1.05 15 24 H 0.11 1.80 5.93 -52.49 -0.31 1.49 15 25 H 0.14 3.56 5.92 -51.93 -0.31 3.25 15 26 H 0.09 1.30 6.08 -51.93 -0.32 0.99 15 27 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15 28 H 0.09 1.66 8.14 -51.93 -0.42 1.23 15 29 H 0.08 1.50 8.14 -51.93 -0.42 1.07 15 LS Contribution 250.02 15.07 3.77 3.77 Total: -1.00 -30.47 250.02 -7.74 -38.22 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -2.83 Total: 6.10 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -4.37 Total: -26.03 kcal Atomic # 7 Polarization: -20.78 SS G_CDS: 0.65 Total: -20.13 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.06 Total: -16.02 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.47 -7.74 -38.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307117065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.963 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds