Wall clock time and date at job start Mon Mar 30 2020 02:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30528 * 1 3 3 Si 1.86809 * 119.99720 * 2 1 4 4 H 1.48498 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47064 * 300.00298 * 3 2 1 6 6 H 1.48498 * 109.46878 * 60.00404 * 3 2 1 7 7 C 1.40352 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99678 * 179.97438 * 7 2 1 9 9 C 1.41798 * 120.00024 * 359.97438 * 7 2 1 10 10 O 1.21769 * 120.00306 * 0.02562 * 9 7 2 11 11 C 1.47830 * 119.99946 * 179.97438 * 9 7 2 12 12 C 1.39756 * 120.15294 * 354.03870 * 11 9 7 13 13 C 1.37871 * 119.84089 * 180.02562 * 12 11 9 14 14 C 1.38466 * 120.15647 * 359.74766 * 13 12 11 15 15 C 1.38422 * 120.30656 * 0.50566 * 14 13 12 16 16 C 1.37903 * 120.15777 * 359.49691 * 15 14 13 17 17 C 1.50708 * 120.07797 * 180.27500 * 16 15 14 18 18 C 1.52991 * 117.49861 * 1.57645 * 17 16 15 19 19 C 1.52994 * 60.00106 * 252.51300 * 18 17 16 20 20 H 0.96992 * 120.00189 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.08150 * 359.97438 * 12 11 9 22 22 H 1.08003 * 119.92231 * 179.97438 * 13 12 11 23 23 H 1.07990 * 119.84494 * 180.25207 * 14 13 12 24 24 H 1.07998 * 119.91753 * 179.76508 * 15 14 13 25 25 H 1.09004 * 115.54772 * 147.28447 * 17 16 15 26 26 H 1.09003 * 117.50107 * 0.02562 * 18 17 16 27 27 H 1.09002 * 117.49913 * 145.02060 * 18 17 16 28 28 H 1.09000 * 117.49991 * 252.51554 * 19 18 17 29 29 H 1.08998 * 117.50091 * 107.48771 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6179 0.0000 4 1 3.6992 1.3465 -0.0006 5 1 1.8804 2.3965 -1.2124 6 1 1.8805 2.3964 1.2125 7 6 2.0071 -1.2155 -0.0005 8 1 3.0871 -1.2154 -0.0010 9 6 1.2981 -2.4435 -0.0005 10 8 0.0804 -2.4436 -0.0005 11 6 2.0373 -3.7237 -0.0017 12 6 3.4291 -3.7306 -0.1283 13 6 4.1120 -4.9283 -0.1291 14 6 3.4226 -6.1222 0.0004 15 6 2.0437 -6.1230 0.1209 16 6 1.3477 -4.9325 0.1232 17 6 -0.1531 -4.9351 0.2608 18 6 -0.8444 -6.2892 0.4315 19 6 -0.9669 -5.5291 -0.8906 20 1 -0.4850 0.8400 0.0004 21 1 3.9684 -2.8000 -0.2261 22 1 5.1875 -4.9352 -0.2273 23 1 3.9629 -7.0572 0.0032 24 1 1.5120 -7.0580 0.2177 25 1 -0.5781 -4.0823 0.7902 26 1 -0.2137 -7.1782 0.4447 27 1 -1.7245 -6.3277 1.0734 28 1 -1.9276 -5.0673 -1.1185 29 1 -0.4169 -5.9179 -1.7476 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307117065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:47 Heat of formation + Delta-G solvation = -10.895816 kcal Electronic energy + Delta-G solvation = -13878.502005 eV Core-core repulsion = 11538.443624 eV Total energy + Delta-G solvation = -2340.058381 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66655 -38.16402 -37.44057 -34.76818 -32.05836 -31.26071 -28.80627 -24.78878 -24.27263 -23.18825 -21.65892 -20.87988 -18.57191 -17.77100 -17.00490 -16.33311 -15.82963 -15.41737 -14.99266 -14.79189 -14.47727 -14.31921 -13.30118 -13.22774 -12.97702 -12.70859 -12.49195 -12.32865 -12.14939 -12.06206 -11.70707 -11.43703 -11.15701 -10.99757 -9.61049 -9.37047 -9.30710 -8.28444 -7.05155 0.30270 0.58809 1.35579 1.36267 1.54166 2.19946 2.27147 2.83705 3.17173 3.72892 3.82490 4.06096 4.13582 4.21729 4.31729 4.35239 4.51101 4.69304 4.78005 4.82808 4.97714 5.17892 5.22021 5.25937 5.32556 5.40450 5.65851 5.73429 5.87772 6.01602 6.25114 6.71591 6.83105 8.28265 8.50619 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.032417 B = 0.010100 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.529701 B = 2771.566457 C = 3559.703178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.025 3.975 3 Si 0.993 3.007 4 H -0.246 1.246 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.089 0.911 9 C 0.364 3.636 10 O -0.572 6.572 11 C -0.153 4.153 12 C -0.103 4.103 13 C -0.137 4.137 14 C -0.111 4.111 15 C -0.139 4.139 16 C -0.042 4.042 17 C -0.133 4.133 18 C -0.158 4.158 19 C -0.166 4.166 20 H 0.281 0.719 21 H 0.124 0.876 22 H 0.153 0.847 23 H 0.160 0.840 24 H 0.146 0.854 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.262 -8.763 -0.056 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.194 4.194 3 Si 0.811 3.189 4 H -0.169 1.169 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.107 0.893 9 C 0.263 3.737 10 O -0.465 6.465 11 C -0.154 4.154 12 C -0.121 4.121 13 C -0.155 4.155 14 C -0.128 4.128 15 C -0.157 4.157 16 C -0.042 4.042 17 C -0.151 4.151 18 C -0.195 4.195 19 C -0.203 4.203 20 H 0.091 0.909 21 H 0.142 0.858 22 H 0.170 0.830 23 H 0.177 0.823 24 H 0.163 0.837 25 H 0.112 0.888 26 H 0.135 0.865 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.519 -8.733 -0.058 10.330 hybrid contribution -0.023 1.175 -0.033 1.176 sum 5.495 -7.558 -0.091 9.345 Atomic orbital electron populations 1.70093 1.09805 1.29631 1.32169 1.27210 0.95502 1.05374 0.91269 0.85042 0.79632 0.75259 0.78920 1.16867 1.18926 1.18932 1.21477 0.95949 0.92537 1.48013 0.89325 1.18827 0.88474 0.88165 0.78266 1.90369 1.16532 1.89163 1.50472 1.21469 0.95664 0.96392 1.01891 1.21599 0.92829 0.99419 0.98230 1.21438 1.01075 0.91710 1.01263 1.21592 0.93609 0.99081 0.98556 1.21254 0.95157 0.96979 1.02306 1.19589 0.93939 0.92965 0.97754 1.21161 0.91076 0.97767 1.05070 1.23186 1.02749 0.94607 0.98949 1.22804 1.01018 1.03805 0.92655 0.90891 0.85766 0.82961 0.82289 0.83693 0.88794 0.86451 0.87817 0.89683 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.13 11.73 21.89 0.26 -46.87 15 2 C 0.03 1.38 5.50 85.40 0.47 1.85 15 3 Si 0.99 40.06 29.56 68.60 2.03 42.09 15 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 15 7 C -0.55 -31.45 8.85 23.67 0.21 -31.25 15 8 H 0.09 4.59 6.07 -2.91 -0.02 4.57 15 9 C 0.36 21.76 6.88 25.69 0.18 21.94 15 10 O -0.57 -37.72 11.88 -4.57 -0.05 -37.77 15 11 C -0.15 -7.60 5.88 -20.01 -0.12 -7.72 15 12 C -0.10 -4.22 9.43 22.55 0.21 -4.00 15 13 C -0.14 -4.29 10.03 22.24 0.22 -4.07 15 14 C -0.11 -3.15 10.05 22.37 0.22 -2.93 15 15 C -0.14 -4.64 9.37 22.23 0.21 -4.43 15 16 C -0.04 -1.84 5.62 -19.58 -0.11 -1.95 15 17 C -0.13 -5.84 4.74 -11.54 -0.05 -5.89 15 18 C -0.16 -5.01 9.87 30.59 0.30 -4.71 15 19 C -0.17 -6.18 10.22 30.59 0.31 -5.86 15 20 H 0.28 14.99 8.29 -92.71 -0.77 14.22 15 21 H 0.12 5.01 6.25 -2.91 -0.02 4.99 15 22 H 0.15 3.53 8.06 -2.91 -0.02 3.51 15 23 H 0.16 3.07 8.06 -2.92 -0.02 3.05 15 24 H 0.15 3.84 5.93 -2.91 -0.02 3.82 15 25 H 0.09 5.09 5.92 -2.38 -0.01 5.07 15 26 H 0.12 3.00 6.08 -2.39 -0.01 2.98 15 27 H 0.10 2.96 8.14 -2.39 -0.02 2.94 15 28 H 0.08 3.20 8.14 -2.39 -0.02 3.18 15 29 H 0.09 3.26 8.14 -2.39 -0.02 3.24 15 Total: -1.00 -73.01 250.02 5.45 -67.56 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 1.17 Total: 24.03 kcal Atomic # 6 Polarization: -51.09 SS G_CDS: 2.06 Total: -49.03 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.26 Total: -46.87 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.05 Total: -37.77 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -73.01 5.45 -67.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307117065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.660 kcal (2) G-P(sol) polarization free energy of solvation -73.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds