Wall clock time and date at job start Mon Mar 30 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47243 * 267.00981 * 3 2 1 5 5 C 1.50693 * 109.47509 * 180.02562 * 4 3 2 6 6 C 1.36361 * 120.08138 * 265.02666 * 5 4 3 7 7 C 1.39549 * 120.15829 * 179.97438 * 6 5 4 8 8 N 1.38857 * 119.83600 * 179.97438 * 7 6 5 9 9 C 1.39577 * 120.31826 * 359.94930 * 7 6 5 10 10 C 1.36327 * 120.16368 * 359.78513 * 9 7 6 11 11 C 1.40870 * 120.08471 * 84.99464 * 5 4 3 12 12 C 1.41145 * 120.15319 * 0.02562 * 11 5 4 13 13 H 1.07997 * 120.00006 * 334.57139 * 12 11 5 14 14 C 1.39861 * 119.99736 * 154.57182 * 12 11 5 15 15 N 1.30909 * 120.00426 * 334.61255 * 14 12 11 16 16 Si 1.86807 * 119.99921 * 154.61767 * 14 12 11 17 17 H 1.48495 * 109.47219 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.46647 * 299.99811 * 16 14 12 19 19 H 1.48503 * 109.47086 * 59.99600 * 16 14 12 20 20 H 1.09004 * 109.46754 * 147.01076 * 3 2 1 21 21 H 1.09000 * 109.47440 * 27.01163 * 3 2 1 22 22 H 1.08996 * 109.47254 * 60.00118 * 4 3 2 23 23 H 1.09000 * 109.47051 * 300.00420 * 4 3 2 24 24 H 1.07993 * 119.91591 * 359.97011 * 6 5 4 25 25 H 0.97003 * 120.00684 * 359.97438 * 8 7 6 26 26 H 0.97000 * 119.99774 * 179.97438 * 8 7 6 27 27 H 1.08004 * 119.91945 * 180.02562 * 9 7 6 28 28 H 1.07998 * 120.08338 * 180.22833 * 10 9 7 29 29 H 0.97001 * 119.99851 * 354.18572 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0761 1.4405 5 6 4.6250 0.0774 1.4406 6 6 5.3095 -1.0906 1.6039 7 6 6.7050 -1.0913 1.6036 8 7 7.3952 -2.2844 1.7710 9 6 7.4101 0.1015 1.4354 10 6 6.7390 1.2759 1.2657 11 6 5.3301 1.2852 1.2712 12 6 4.6284 2.4980 1.1015 13 1 3.6269 2.4905 0.6973 14 6 5.2300 3.7096 1.4568 15 7 6.1729 3.7308 2.3646 16 14 4.6880 5.2977 0.6359 17 1 5.4748 6.4317 1.1838 18 1 4.9148 5.2003 -0.8284 19 1 3.2441 5.5233 0.8993 20 1 2.9709 0.8628 -0.5596 21 1 2.9718 -0.9147 -0.4667 22 1 2.7551 -0.7860 2.0001 23 1 2.7542 0.9915 1.9073 24 1 4.7703 -2.0172 1.7338 25 1 6.9075 -3.1147 1.8881 26 1 8.3652 -2.2877 1.7709 27 1 8.4901 0.0934 1.4359 28 1 7.2860 2.1975 1.1320 29 1 6.3961 2.9218 2.8511 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307485955.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:57 Heat of formation + Delta-G solvation = 9.353955 kcal Electronic energy + Delta-G solvation = -13623.893686 eV Core-core repulsion = 11317.006152 eV Total energy + Delta-G solvation = -2306.887534 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.04370 -37.80717 -36.35150 -35.09031 -33.31573 -30.61754 -29.75013 -26.27731 -25.16155 -22.61776 -21.42894 -19.46609 -18.32878 -17.50962 -16.95381 -16.19523 -15.99522 -15.52514 -14.84201 -14.79778 -14.30574 -14.01429 -13.73247 -13.47660 -13.21505 -13.05163 -12.73116 -12.52143 -12.48545 -11.94779 -11.71459 -11.26912 -11.13341 -10.92187 -10.43243 -9.35900 -8.90464 -8.25721 -5.95099 1.03374 1.21225 1.59098 1.74743 1.83283 1.83747 1.84853 2.46547 2.90027 3.16010 3.55502 3.76268 4.31084 4.40980 4.52483 4.54866 4.73765 4.90220 5.13089 5.19085 5.34240 5.38500 5.69423 5.77828 5.88315 6.06161 6.14200 6.49813 6.54119 6.63296 6.91935 7.17176 7.30874 7.44695 8.33868 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.013862 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.605742 B = 2019.366334 C = 3601.846644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.243 3.757 3 C -0.014 4.014 4 C -0.043 4.043 5 C -0.152 4.152 6 C -0.151 4.151 7 C 0.102 3.898 8 N -0.882 5.882 9 C -0.169 4.169 10 C -0.193 4.193 11 C 0.040 3.960 12 C -0.552 4.552 13 H 0.079 0.921 14 C 0.000 4.000 15 N -0.844 5.844 16 Si 1.103 2.897 17 H -0.283 1.283 18 H -0.264 1.264 19 H -0.265 1.265 20 H 0.111 0.889 21 H 0.131 0.869 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.124 0.876 25 H 0.397 0.603 26 H 0.393 0.607 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 -7.088 -2.928 7.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.073 4.073 3 C -0.054 4.054 4 C -0.081 4.081 5 C -0.154 4.154 6 C -0.174 4.174 7 C 0.001 3.999 8 N -0.426 5.426 9 C -0.192 4.192 10 C -0.213 4.213 11 C 0.037 3.963 12 C -0.582 4.582 13 H 0.097 0.903 14 C -0.213 4.213 15 N -0.471 5.471 16 Si 0.923 3.077 17 H -0.208 1.208 18 H -0.189 1.189 19 H -0.189 1.189 20 H 0.129 0.871 21 H 0.149 0.851 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.141 0.859 25 H 0.226 0.774 26 H 0.221 0.779 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.015 -5.397 -2.991 6.253 hybrid contribution 0.705 -1.647 0.382 1.832 sum -0.310 -7.044 -2.609 7.518 Atomic orbital electron populations 1.81161 1.14448 1.11554 1.10839 1.29734 0.95538 0.90895 0.91126 1.19442 0.79019 1.06949 0.99961 1.20023 0.91761 1.02005 0.94342 1.19273 0.94262 0.92832 1.09037 1.20091 0.91802 0.97638 1.07837 1.17463 0.91477 0.86679 1.04279 1.41757 1.08153 1.05756 1.86904 1.20138 0.97974 0.92387 1.08686 1.20700 0.95022 0.96349 1.09259 1.17656 0.91521 0.93549 0.93604 1.20469 1.03597 0.92404 1.41703 0.90277 1.27944 0.92767 1.06574 0.94041 1.70599 1.26712 1.33530 1.16215 0.83162 0.76885 0.71236 0.76441 1.20843 1.18926 1.18935 0.87136 0.85096 0.90629 0.92591 0.85853 0.77450 0.77919 0.88176 0.90182 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.47 18.54 20.01 0.37 -17.09 15 2 C 0.24 7.33 15.43 89.44 1.38 8.71 15 3 C -0.01 -0.38 5.57 28.79 0.16 -0.22 15 4 C -0.04 -1.41 4.63 29.85 0.14 -1.27 15 5 C -0.15 -6.07 5.16 -19.66 -0.10 -6.17 15 6 C -0.15 -5.46 9.44 22.15 0.21 -5.25 15 7 C 0.10 3.76 6.77 38.67 0.26 4.03 15 8 N -0.88 -24.11 9.04 -51.07 -0.46 -24.57 15 9 C -0.17 -7.15 9.82 22.15 0.22 -6.94 15 10 C -0.19 -9.40 7.89 22.48 0.18 -9.22 15 11 C 0.04 1.91 5.29 -21.27 -0.11 1.80 15 12 C -0.55 -27.16 8.03 23.38 0.19 -26.97 15 13 H 0.08 3.67 6.12 -2.91 -0.02 3.65 15 14 C 0.00 0.01 4.93 85.22 0.42 0.43 15 15 N -0.84 -45.66 12.32 21.82 0.27 -45.39 15 16 Si 1.10 43.44 30.00 68.60 2.06 45.50 15 17 H -0.28 -11.32 7.11 99.48 0.71 -10.61 15 18 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 19 H -0.26 -9.72 7.11 99.48 0.71 -9.02 15 20 H 0.11 3.22 7.30 -2.38 -0.02 3.20 15 21 H 0.13 2.87 8.14 -2.39 -0.02 2.85 15 22 H 0.08 2.17 8.05 -2.39 -0.02 2.15 15 23 H 0.06 2.10 7.04 -2.39 -0.02 2.08 15 24 H 0.12 3.64 8.05 -2.91 -0.02 3.61 15 25 H 0.40 8.79 8.83 -92.71 -0.82 7.98 15 26 H 0.39 9.42 8.83 -92.71 -0.82 8.60 15 27 H 0.10 3.86 8.06 -2.91 -0.02 3.83 15 28 H 0.08 4.24 6.50 -2.91 -0.02 4.22 15 29 H 0.28 15.68 6.69 -92.71 -0.62 15.06 15 Total: -1.00 -58.97 257.80 4.88 -54.09 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.29 Total: 28.54 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 2.94 Total: -41.07 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: 0.18 Total: -87.06 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.06 Total: 45.50 kcal Total: -58.97 4.88 -54.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307485955.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.444 kcal (2) G-P(sol) polarization free energy of solvation -58.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds