Wall clock time and date at job start Mon Mar 30 2020 03:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46809 * 155.04438 * 3 2 1 5 5 C 1.50704 * 109.47182 * 180.02562 * 4 3 2 6 6 C 1.37688 * 120.05354 * 265.00550 * 5 4 3 7 7 C 1.38474 * 120.32698 * 179.74494 * 6 5 4 8 8 C 1.39335 * 120.42523 * 0.25618 * 7 6 5 9 9 N 1.39680 * 119.95431 * 180.02562 * 8 7 6 10 10 C 1.38285 * 120.09618 * 359.97438 * 8 7 6 11 11 C 1.40603 * 119.67492 * 0.02562 * 10 8 7 12 12 C 1.41398 * 120.21077 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00515 * 154.01859 * 12 11 10 14 14 C 1.39932 * 119.99792 * 334.02377 * 12 11 10 15 15 N 1.30829 * 119.99987 * 343.68834 * 14 12 11 16 16 Si 1.86800 * 119.99946 * 163.69805 * 14 12 11 17 17 H 1.48504 * 109.47348 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47525 * 119.99854 * 16 14 12 19 19 H 1.48507 * 109.46919 * 239.99738 * 16 14 12 20 20 H 1.09001 * 109.47348 * 35.04546 * 3 2 1 21 21 H 1.09001 * 109.47797 * 275.04517 * 3 2 1 22 22 H 1.09005 * 109.47312 * 60.00393 * 4 3 2 23 23 H 1.08999 * 109.47399 * 299.99911 * 4 3 2 24 24 H 1.08002 * 119.83818 * 0.02562 * 6 5 4 25 25 H 1.08000 * 119.79056 * 180.27173 * 7 6 5 26 26 H 0.96996 * 119.99864 * 359.97438 * 9 8 7 27 27 H 0.97007 * 120.00179 * 180.02562 * 9 8 7 28 28 H 1.07991 * 120.16461 * 179.97438 * 10 8 7 29 29 H 0.97001 * 119.99936 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.3088 -0.6086 5 6 4.6243 1.3093 -0.6093 6 6 5.3141 1.9043 0.4232 7 6 6.6988 1.9035 0.4310 8 6 7.4099 1.3057 -0.6075 9 7 8.8066 1.3100 -0.5893 10 6 6.7350 0.7071 -1.6555 11 6 5.3290 0.7056 -1.6676 12 6 4.6273 0.0963 -2.7334 13 1 3.6280 -0.2818 -2.5759 14 6 5.2278 -0.0167 -3.9923 15 7 6.2808 0.7035 -4.2818 16 14 4.5255 -1.1959 -5.2595 17 1 3.3422 -1.8885 -4.6890 18 1 4.1198 -0.4377 -6.4700 19 1 5.5567 -2.1996 -5.6265 20 1 2.9717 -0.8405 -0.5901 21 1 2.9714 -0.0896 1.0236 22 1 2.7536 2.1500 -0.0185 23 1 2.7539 1.3990 -1.6323 24 1 4.7725 2.3701 1.2332 25 1 7.2311 2.3689 1.2474 26 1 9.2807 1.7294 0.1456 27 1 9.3024 0.8944 -1.3122 28 1 7.2850 0.2438 -2.4611 29 1 6.6968 0.6254 -5.1546 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307525884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:00 Heat of formation + Delta-G solvation = 26.132344 kcal Electronic energy + Delta-G solvation = -13605.054226 eV Core-core repulsion = 11298.894258 eV Total energy + Delta-G solvation = -2306.159969 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.05934 -36.34566 -34.44851 -33.51769 -31.52443 -29.51237 -27.28814 -25.43577 -23.00388 -21.16048 -19.38158 -17.35396 -16.89406 -15.96955 -15.22717 -14.64606 -14.47843 -14.13439 -13.15828 -12.96758 -12.72622 -12.47376 -12.07695 -11.81127 -11.62779 -11.38207 -11.12306 -11.04498 -10.76619 -10.46026 -10.25519 -9.61322 -9.41237 -9.34632 -8.89337 -7.35265 -6.77843 -6.20135 -4.37949 2.82075 3.02796 3.09076 3.13413 3.21682 3.25953 3.31757 3.94074 4.56483 4.68251 4.97237 5.62718 5.73756 6.03431 6.08123 6.27081 6.48933 6.53020 6.68472 6.89360 7.08741 7.13266 7.39485 7.40906 7.83935 7.93270 7.98546 8.04289 8.16555 8.45572 8.72444 8.89528 8.95156 9.05487 10.20677 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.014056 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.749543 B = 1991.599187 C = 3565.338134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.221 3.779 3 C -0.029 4.029 4 C -0.040 4.040 5 C -0.234 4.234 6 C -0.051 4.051 7 C -0.301 4.301 8 C 0.215 3.785 9 N -0.895 5.895 10 C -0.234 4.234 11 C 0.150 3.850 12 C -0.461 4.461 13 H 0.081 0.919 14 C 0.079 3.921 15 N -0.790 5.790 16 Si 0.899 3.101 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.273 1.273 20 H 0.112 0.888 21 H 0.101 0.899 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.381 0.619 27 H 0.387 0.613 28 H 0.116 0.884 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 -1.104 3.415 4.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.095 4.095 3 C -0.069 4.069 4 C -0.078 4.078 5 C -0.237 4.237 6 C -0.070 4.070 7 C -0.323 4.323 8 C 0.114 3.886 9 N -0.435 5.435 10 C -0.258 4.258 11 C 0.147 3.853 12 C -0.490 4.490 13 H 0.099 0.901 14 C -0.139 4.139 15 N -0.415 5.415 16 Si 0.724 3.276 17 H -0.183 1.183 18 H -0.201 1.201 19 H -0.199 1.199 20 H 0.130 0.870 21 H 0.119 0.881 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.207 0.793 27 H 0.213 0.787 28 H 0.134 0.866 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.518 -1.053 3.223 3.430 hybrid contribution 0.737 -0.423 -0.707 1.105 sum 1.255 -1.476 2.516 3.176 Atomic orbital electron populations 1.81115 1.13496 1.10095 1.10275 1.29791 0.95760 0.92014 0.91953 1.19611 0.79742 1.03202 1.04323 1.19991 0.94159 0.92962 1.00717 1.19293 0.92425 1.11522 1.00439 1.20151 0.93112 0.97552 0.96193 1.19840 0.93898 1.16924 1.01682 1.17718 0.82449 0.94213 0.94174 1.42377 1.04297 1.68461 1.28374 1.20725 0.94580 1.10994 0.99494 1.17140 0.91013 0.87023 0.90115 1.19600 1.01665 1.34131 0.93654 0.90092 1.25876 0.94185 0.94298 0.99562 1.69865 1.18198 1.31534 1.21937 0.86405 0.80096 0.80854 0.80261 1.18348 1.20134 1.19860 0.86968 0.88097 0.93062 0.90926 0.89372 0.89818 0.79334 0.78698 0.86585 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -8.72 18.54 42.15 0.78 -7.93 15 2 C 0.22 3.63 15.43 -20.76 -0.32 3.31 15 3 C -0.03 -0.44 5.58 -29.52 -0.16 -0.60 15 4 C -0.04 -0.71 4.64 -27.88 -0.13 -0.84 15 5 C -0.23 -4.98 5.19 -103.87 -0.54 -5.52 15 6 C -0.05 -1.04 9.65 -39.70 -0.38 -1.43 15 7 C -0.30 -6.29 9.90 -39.09 -0.39 -6.68 15 8 C 0.22 4.70 6.74 -83.86 -0.57 4.13 15 9 N -0.89 -15.80 9.09 32.37 0.29 -15.50 15 10 C -0.23 -5.65 8.52 -38.67 -0.33 -5.98 15 11 C 0.15 3.62 5.56 -106.85 -0.59 3.02 15 12 C -0.46 -11.06 8.11 -37.75 -0.31 -11.36 15 13 H 0.08 1.83 6.09 -52.49 -0.32 1.51 15 14 C 0.08 1.86 5.16 -17.34 -0.09 1.78 15 15 N -0.79 -19.50 10.96 55.55 0.61 -18.89 15 16 Si 0.90 17.97 29.59 -169.99 -5.03 12.94 15 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 20 H 0.11 1.74 7.32 -51.93 -0.38 1.36 15 21 H 0.10 1.33 8.14 -51.93 -0.42 0.91 15 22 H 0.05 0.84 8.05 -51.93 -0.42 0.42 15 23 H 0.07 1.40 7.03 -51.93 -0.37 1.03 15 24 H 0.09 1.56 8.06 -52.49 -0.42 1.14 15 25 H 0.08 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.38 5.68 8.84 -40.82 -0.36 5.32 15 27 H 0.39 6.35 8.84 -40.82 -0.36 5.99 15 28 H 0.12 2.94 6.21 -52.49 -0.33 2.62 15 29 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 LS Contribution 258.92 15.07 3.90 3.90 Total: -1.00 -26.94 258.92 -6.19 -33.13 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -2.93 Total: 12.52 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -3.81 Total: -20.17 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 1.68 Total: -42.33 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -26.94 -6.19 -33.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307525884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.261 kcal (2) G-P(sol) polarization free energy of solvation -26.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds