Wall clock time and date at job start Mon Mar 30 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46933 * 141.21174 * 3 2 1 5 5 C 1.50693 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.38904 * 119.70293 * 270.01518 * 5 4 3 7 7 C 1.38155 * 120.62957 * 179.97438 * 6 5 4 8 8 C 1.38756 * 120.02657 * 359.72914 * 7 6 5 9 9 N 1.38734 * 120.29726 * 180.27851 * 8 7 6 10 10 C 1.41536 * 119.40889 * 0.54479 * 8 7 6 11 11 C 1.41045 * 120.30871 * 179.72074 * 10 8 7 12 12 H 1.08003 * 119.99741 * 329.25882 * 11 10 8 13 13 C 1.39928 * 120.00117 * 149.25033 * 11 10 8 14 14 N 1.30882 * 119.99986 * 162.20417 * 13 11 10 15 15 Si 1.86797 * 120.00140 * 342.20913 * 13 11 10 16 16 H 1.48495 * 109.47344 * 95.32542 * 15 13 11 17 17 H 1.48503 * 109.47317 * 215.32933 * 15 13 11 18 18 H 1.48504 * 109.47012 * 335.32578 * 15 13 11 19 19 C 1.36447 * 119.70206 * 90.00112 * 5 4 3 20 20 H 1.08997 * 109.47420 * 21.20904 * 3 2 1 21 21 H 1.08993 * 109.46956 * 261.20736 * 3 2 1 22 22 H 1.08997 * 109.47288 * 59.99649 * 4 3 2 23 23 H 1.08999 * 109.46599 * 299.99874 * 4 3 2 24 24 H 1.08001 * 119.68171 * 0.02562 * 6 5 4 25 25 H 1.08003 * 119.98700 * 180.02562 * 7 6 5 26 26 H 0.97000 * 119.99947 * 174.91736 * 9 8 7 27 27 H 0.96999 * 119.99628 * 354.90570 * 9 8 7 28 28 H 0.97004 * 119.99892 * 179.97438 * 14 13 11 29 29 H 1.07997 * 120.02639 * 0.04149 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1253 -0.9037 5 6 4.6244 1.1264 -0.9032 6 6 5.3118 1.8826 0.0376 7 6 6.6932 1.8971 0.0558 8 6 7.4077 1.1475 -0.8677 9 7 8.7949 1.1534 -0.8508 10 6 6.7087 0.3811 -1.8306 11 6 7.4159 -0.3832 -2.7819 12 1 8.3842 -0.0529 -3.1281 13 6 6.8633 -1.5696 -3.2770 14 7 7.3238 -2.0939 -4.3843 15 14 5.4681 -2.4049 -2.3577 16 1 4.1689 -1.9817 -2.9391 17 1 5.6080 -3.8784 -2.4785 18 1 5.5184 -2.0188 -0.9247 19 6 5.3013 0.3843 -1.8267 20 1 2.9718 -0.9572 -0.3718 21 1 2.9712 0.1579 1.0155 22 1 2.7537 2.0832 -0.5319 23 1 2.7542 0.9680 -1.9192 24 1 4.7612 2.4640 0.7622 25 1 7.2171 2.4885 0.7922 26 1 9.2897 0.5719 -1.4491 27 1 9.2700 1.7392 -0.2409 28 1 6.9409 -2.9165 -4.7273 29 1 4.7576 -0.2000 -2.5542 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307531843.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:52 Heat of formation + Delta-G solvation = 29.405438 kcal Electronic energy + Delta-G solvation = -13626.924551 eV Core-core repulsion = 11320.906514 eV Total energy + Delta-G solvation = -2306.018037 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.44601 -36.68300 -34.59068 -33.48684 -31.81997 -30.35705 -27.75852 -25.05831 -23.46847 -21.60031 -19.44219 -17.37623 -17.15292 -16.12799 -15.96641 -14.85054 -14.70763 -13.99679 -13.42299 -13.19376 -13.02722 -12.79424 -12.32068 -12.12661 -11.98467 -11.74583 -11.42939 -10.95256 -10.78321 -10.71754 -10.39708 -9.74931 -9.68123 -9.27729 -9.09626 -7.63609 -6.86285 -6.53426 -4.28710 2.61185 2.68824 2.93296 2.96601 3.12492 3.24523 3.32278 4.02222 4.20991 4.54939 5.06928 5.30829 5.32777 5.62773 5.64822 5.93520 5.99736 6.15934 6.31474 6.37544 6.62832 6.88302 7.20729 7.25289 7.42100 7.61006 7.70575 7.88382 8.04371 8.29418 8.46809 8.75219 8.90426 8.94659 10.17454 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.011705 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.210199 B = 2391.643432 C = 3383.934323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.217 3.783 3 C -0.028 4.028 4 C -0.063 4.063 5 C -0.102 4.102 6 C -0.179 4.179 7 C -0.177 4.177 8 C 0.137 3.863 9 N -0.881 5.881 10 C 0.047 3.953 11 C -0.455 4.455 12 H 0.085 0.915 13 C 0.084 3.916 14 N -0.821 5.821 15 Si 0.903 3.097 16 H -0.270 1.270 17 H -0.295 1.295 18 H -0.241 1.241 19 C -0.200 4.200 20 H 0.106 0.894 21 H 0.111 0.889 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.396 0.604 27 H 0.379 0.621 28 H 0.282 0.718 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 2.680 6.556 7.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.100 4.100 3 C -0.068 4.068 4 C -0.102 4.102 5 C -0.104 4.104 6 C -0.199 4.199 7 C -0.201 4.201 8 C 0.034 3.966 9 N -0.421 5.421 10 C 0.041 3.959 11 C -0.484 4.484 12 H 0.103 0.897 13 C -0.133 4.133 14 N -0.447 5.447 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.222 1.222 18 H -0.164 1.164 19 C -0.221 4.221 20 H 0.124 0.876 21 H 0.129 0.871 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.225 0.775 27 H 0.205 0.795 28 H 0.092 0.908 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.274 2.471 6.326 7.540 hybrid contribution 0.313 -0.505 0.190 0.624 sum -2.961 1.966 6.516 7.423 Atomic orbital electron populations 1.81161 1.13245 1.09536 1.09640 1.29563 0.95547 0.92484 0.92448 1.19494 0.80373 1.02953 1.03974 1.20358 0.94245 0.96634 0.98953 1.18672 0.92203 1.01017 0.98469 1.20002 0.93127 1.05128 1.01606 1.20069 0.94082 1.04780 1.01182 1.17945 0.83694 0.99844 0.95116 1.41986 1.03807 1.49294 1.47022 1.17361 0.91496 0.94904 0.92097 1.19086 1.05502 1.05062 1.18797 0.89663 1.26043 0.96656 0.97171 0.93405 1.69717 1.39409 1.18785 1.16745 0.86422 0.80773 0.76787 0.83050 1.19606 1.22248 1.16435 1.20394 0.93720 1.05563 1.02412 0.87612 0.87121 0.91250 0.91297 0.88843 0.88926 0.77510 0.79491 0.90791 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.63 18.54 42.15 0.78 -6.85 15 2 C 0.22 3.12 15.43 -20.76 -0.32 2.80 15 3 C -0.03 -0.37 5.68 -29.52 -0.17 -0.53 15 4 C -0.06 -0.95 5.28 -27.88 -0.15 -1.10 15 5 C -0.10 -1.92 5.10 -105.02 -0.54 -2.45 15 6 C -0.18 -3.28 9.68 -39.37 -0.38 -3.66 15 7 C -0.18 -3.41 9.89 -39.42 -0.39 -3.80 15 8 C 0.14 2.90 6.79 -83.29 -0.57 2.33 15 9 N -0.88 -16.00 8.97 32.72 0.29 -15.71 15 10 C 0.05 1.10 5.10 -106.63 -0.54 0.55 15 11 C -0.45 -11.58 8.87 -37.89 -0.34 -11.91 15 12 H 0.09 2.26 7.13 -52.48 -0.37 1.88 15 13 C 0.08 2.13 5.41 -17.32 -0.09 2.03 15 14 N -0.82 -21.50 13.93 55.55 0.77 -20.73 15 15 Si 0.90 19.78 24.52 -169.99 -4.17 15.61 15 16 H -0.27 -5.70 6.72 56.52 0.38 -5.32 15 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 18 H -0.24 -5.22 6.86 56.52 0.39 -4.83 15 19 C -0.20 -4.40 6.73 -39.28 -0.26 -4.67 15 20 H 0.11 1.41 8.14 -51.93 -0.42 0.99 15 21 H 0.11 1.24 8.14 -51.93 -0.42 0.82 15 22 H 0.07 0.93 8.08 -51.93 -0.42 0.51 15 23 H 0.07 1.04 8.07 -51.93 -0.42 0.63 15 24 H 0.09 1.47 8.06 -52.49 -0.42 1.05 15 25 H 0.09 1.56 8.06 -52.48 -0.42 1.14 15 26 H 0.40 7.32 7.21 -40.82 -0.29 7.03 15 27 H 0.38 5.64 8.84 -40.82 -0.36 5.28 15 28 H 0.28 6.78 8.30 -40.82 -0.34 6.44 15 29 H 0.10 2.23 4.78 -52.49 -0.25 1.98 15 LS Contribution 255.41 15.07 3.85 3.85 Total: -1.00 -27.44 255.41 -5.20 -32.64 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -2.98 Total: 11.59 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.74 Total: -20.40 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 1.85 Total: -43.29 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.17 Total: 15.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.44 -5.20 -32.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307531843.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.045 kcal (2) G-P(sol) polarization free energy of solvation -27.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds