Wall clock time and date at job start Mon Mar 30 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46933 * 141.21174 * 3 2 1 5 5 C 1.50693 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.38904 * 119.70293 * 270.01518 * 5 4 3 7 7 C 1.38155 * 120.62957 * 179.97438 * 6 5 4 8 8 C 1.38756 * 120.02657 * 359.72914 * 7 6 5 9 9 N 1.38734 * 120.29726 * 180.27851 * 8 7 6 10 10 C 1.41536 * 119.40889 * 0.54479 * 8 7 6 11 11 C 1.41045 * 120.30871 * 179.72074 * 10 8 7 12 12 H 1.08003 * 119.99741 * 329.25882 * 11 10 8 13 13 C 1.39928 * 120.00117 * 149.25033 * 11 10 8 14 14 N 1.30882 * 119.99986 * 162.20417 * 13 11 10 15 15 Si 1.86797 * 120.00140 * 342.20913 * 13 11 10 16 16 H 1.48495 * 109.47344 * 95.32542 * 15 13 11 17 17 H 1.48503 * 109.47317 * 215.32933 * 15 13 11 18 18 H 1.48504 * 109.47012 * 335.32578 * 15 13 11 19 19 C 1.36447 * 119.70206 * 90.00112 * 5 4 3 20 20 H 1.08997 * 109.47420 * 21.20904 * 3 2 1 21 21 H 1.08993 * 109.46956 * 261.20736 * 3 2 1 22 22 H 1.08997 * 109.47288 * 59.99649 * 4 3 2 23 23 H 1.08999 * 109.46599 * 299.99874 * 4 3 2 24 24 H 1.08001 * 119.68171 * 0.02562 * 6 5 4 25 25 H 1.08003 * 119.98700 * 180.02562 * 7 6 5 26 26 H 0.97000 * 119.99947 * 174.91736 * 9 8 7 27 27 H 0.96999 * 119.99628 * 354.90570 * 9 8 7 28 28 H 0.97004 * 119.99892 * 179.97438 * 14 13 11 29 29 H 1.07997 * 120.02639 * 0.04149 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1253 -0.9037 5 6 4.6244 1.1264 -0.9032 6 6 5.3118 1.8826 0.0376 7 6 6.6932 1.8971 0.0558 8 6 7.4077 1.1475 -0.8677 9 7 8.7949 1.1534 -0.8508 10 6 6.7087 0.3811 -1.8306 11 6 7.4159 -0.3832 -2.7819 12 1 8.3842 -0.0529 -3.1281 13 6 6.8633 -1.5696 -3.2770 14 7 7.3238 -2.0939 -4.3843 15 14 5.4681 -2.4049 -2.3577 16 1 4.1689 -1.9817 -2.9391 17 1 5.6080 -3.8784 -2.4785 18 1 5.5184 -2.0188 -0.9247 19 6 5.3013 0.3843 -1.8267 20 1 2.9718 -0.9572 -0.3718 21 1 2.9712 0.1579 1.0155 22 1 2.7537 2.0832 -0.5319 23 1 2.7542 0.9680 -1.9192 24 1 4.7612 2.4640 0.7622 25 1 7.2171 2.4885 0.7922 26 1 9.2897 0.5719 -1.4491 27 1 9.2700 1.7392 -0.2409 28 1 6.9409 -2.9165 -4.7273 29 1 4.7576 -0.2000 -2.5542 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307531843.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:52 Heat of formation + Delta-G solvation = 12.288360 kcal Electronic energy + Delta-G solvation = -13627.666803 eV Core-core repulsion = 11320.906514 eV Total energy + Delta-G solvation = -2306.760289 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00273 -37.89481 -36.00871 -35.24093 -33.16051 -32.04120 -29.19203 -26.76591 -24.79460 -23.22527 -21.00050 -19.01810 -18.38955 -17.70851 -17.48190 -16.44992 -15.92470 -15.38519 -14.97396 -14.67757 -14.48365 -14.23844 -13.89172 -13.53016 -13.36138 -13.22673 -12.76004 -12.56387 -12.42643 -12.13696 -11.72020 -11.38575 -11.35872 -10.83625 -10.76515 -9.30182 -8.69530 -8.10216 -6.12799 0.99462 1.10906 1.35918 1.51097 1.59480 1.81912 1.83204 2.25243 2.78733 3.11904 3.60743 3.69590 4.24788 4.40597 4.44320 4.51096 4.79991 4.87452 4.97926 5.02962 5.24564 5.31643 5.52310 5.66525 5.83272 5.95257 6.27679 6.36980 6.57694 6.61726 6.77640 6.98989 7.22792 7.51364 8.39656 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.011705 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.210199 B = 2391.643432 C = 3383.934323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.242 3.758 3 C -0.021 4.021 4 C -0.061 4.061 5 C -0.108 4.108 6 C -0.154 4.154 7 C -0.182 4.182 8 C 0.126 3.874 9 N -0.875 5.875 10 C 0.010 3.990 11 C -0.480 4.480 12 H 0.054 0.946 13 C 0.041 3.959 14 N -0.874 5.874 15 Si 0.952 3.048 16 H -0.259 1.259 17 H -0.295 1.295 18 H -0.234 1.234 19 C -0.203 4.203 20 H 0.106 0.894 21 H 0.140 0.860 22 H 0.094 0.906 23 H 0.063 0.937 24 H 0.135 0.865 25 H 0.123 0.877 26 H 0.392 0.608 27 H 0.396 0.604 28 H 0.284 0.716 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 4.162 9.325 10.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.075 4.075 3 C -0.061 4.061 4 C -0.100 4.100 5 C -0.110 4.110 6 C -0.173 4.173 7 C -0.205 4.205 8 C 0.023 3.977 9 N -0.416 5.416 10 C 0.005 3.995 11 C -0.512 4.512 12 H 0.072 0.928 13 C -0.170 4.170 14 N -0.503 5.503 15 Si 0.776 3.224 16 H -0.185 1.185 17 H -0.223 1.223 18 H -0.157 1.157 19 C -0.223 4.223 20 H 0.124 0.876 21 H 0.158 0.842 22 H 0.112 0.888 23 H 0.082 0.918 24 H 0.152 0.848 25 H 0.141 0.859 26 H 0.220 0.780 27 H 0.225 0.775 28 H 0.094 0.906 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.776 3.984 9.124 11.042 hybrid contribution 0.796 -0.715 -0.506 1.184 sum -3.980 3.270 8.617 10.040 Atomic orbital electron populations 1.81204 1.14556 1.10862 1.11145 1.29663 0.95469 0.91223 0.91105 1.19532 0.79208 1.02215 1.05163 1.20343 0.91444 0.98664 0.99502 1.18981 0.94366 1.00042 0.97583 1.20572 0.93024 1.02973 1.00735 1.20509 0.94847 1.04247 1.00945 1.18231 0.84833 0.99593 0.95087 1.41967 1.03156 1.49348 1.47079 1.17513 0.92514 0.96453 0.93065 1.19079 1.04994 1.06348 1.20770 0.92826 1.26715 0.98835 0.97536 0.93919 1.69783 1.41964 1.19959 1.18607 0.85675 0.78794 0.75723 0.82231 1.18485 1.22336 1.15698 1.20547 0.93266 1.05650 1.02849 0.87619 0.84226 0.88761 0.91838 0.84758 0.85902 0.78005 0.77500 0.90633 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.37 18.54 20.01 0.37 -15.00 15 2 C 0.24 6.11 15.43 89.44 1.38 7.49 15 3 C -0.02 -0.46 5.68 28.79 0.16 -0.30 15 4 C -0.06 -1.55 5.28 29.85 0.16 -1.39 15 5 C -0.11 -3.62 5.10 -20.13 -0.10 -3.72 15 6 C -0.15 -4.78 9.68 22.41 0.22 -4.56 15 7 C -0.18 -6.20 9.89 22.37 0.22 -5.98 15 8 C 0.13 5.13 6.79 38.99 0.26 5.40 15 9 N -0.87 -31.02 8.97 -50.39 -0.45 -31.47 15 10 C 0.01 0.45 5.10 -21.17 -0.11 0.34 15 11 C -0.48 -25.51 8.87 23.37 0.21 -25.31 15 12 H 0.05 3.05 7.13 -2.91 -0.02 3.03 15 13 C 0.04 2.13 5.41 85.24 0.46 2.59 15 14 N -0.87 -48.35 13.93 21.83 0.30 -48.05 15 15 Si 0.95 41.07 24.52 68.60 1.68 42.75 15 16 H -0.26 -10.56 6.72 99.48 0.67 -9.89 15 17 H -0.30 -12.58 7.11 99.48 0.71 -11.87 15 18 H -0.23 -9.65 6.86 99.48 0.68 -8.97 15 19 C -0.20 -8.57 6.73 22.46 0.15 -8.42 15 20 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 21 H 0.14 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.09 1.97 8.08 -2.39 -0.02 1.95 15 23 H 0.06 1.71 8.07 -2.39 -0.02 1.69 15 24 H 0.13 3.18 8.06 -2.91 -0.02 3.16 15 25 H 0.12 3.46 8.06 -2.91 -0.02 3.43 15 26 H 0.39 14.82 7.21 -92.71 -0.67 14.15 15 27 H 0.40 11.01 8.84 -92.71 -0.82 10.19 15 28 H 0.28 14.42 8.30 -92.71 -0.77 13.65 15 29 H 0.09 3.93 4.78 -2.91 -0.01 3.92 15 Total: -1.00 -61.11 255.41 4.56 -56.55 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.36 Total: 29.07 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 3.01 Total: -33.86 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: 0.22 Total: -94.52 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.68 Total: 42.75 kcal Total: -61.11 4.56 -56.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307531843.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.842 kcal (2) G-P(sol) polarization free energy of solvation -61.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds