Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86796 * 120.00315 * 2 1 4 4 H 1.48499 * 109.47566 * 270.11712 * 3 2 1 5 5 H 1.48505 * 109.46861 * 30.11324 * 3 2 1 6 6 H 1.48493 * 109.47509 * 150.11493 * 3 2 1 7 7 C 1.40134 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00217 * 346.88671 * 7 2 1 9 9 C 1.40805 * 119.99694 * 166.88790 * 7 2 1 10 10 C 1.40762 * 120.34073 * 326.70306 * 9 7 2 11 11 C 1.36438 * 120.00064 * 179.97438 * 10 9 7 12 12 C 1.38946 * 120.71653 * 359.97438 * 11 10 9 13 13 C 1.38044 * 120.69374 * 359.72028 * 12 11 10 14 14 C 1.39326 * 119.96745 * 0.56156 * 13 12 11 15 15 C 1.47448 * 120.35073 * 179.72041 * 14 13 12 16 16 N 1.32266 * 126.88934 * 173.88890 * 15 14 13 17 17 N 1.28817 * 107.86197 * 180.26320 * 16 15 14 18 18 N 1.28647 * 109.83949 * 359.75200 * 17 16 15 19 19 N 1.29012 * 109.17463 * 359.97438 * 18 17 16 20 20 H 0.96994 * 126.55301 * 179.97438 * 19 18 17 21 21 H 0.97000 * 119.99784 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.00192 * 359.95484 * 10 9 7 23 23 H 1.07991 * 119.64039 * 179.97438 * 11 10 9 24 24 H 1.08002 * 119.65413 * 180.02562 * 12 11 10 25 25 H 1.08001 * 120.01637 * 180.28143 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.4865 2.0478 -1.4000 5 1 1.4400 2.6519 0.7025 6 1 3.5401 1.4394 0.6976 7 6 2.0079 -1.2136 -0.0005 8 1 1.4890 -2.1368 0.2112 9 6 3.3884 -1.2294 -0.2772 10 6 3.9431 -0.3038 -1.1812 11 6 5.2818 -0.3250 -1.4437 12 6 6.1114 -1.2533 -0.8268 13 6 5.5995 -2.1701 0.0692 14 6 4.2356 -2.1780 0.3540 15 6 3.6788 -3.1576 1.3051 16 7 2.4357 -3.2105 1.7536 17 7 2.3517 -4.2046 2.5686 18 7 3.4914 -4.7947 2.6564 19 7 4.3407 -4.1914 1.8954 20 1 5.2735 -4.4262 1.7710 21 1 -0.4850 0.8401 -0.0004 22 1 3.3089 0.4228 -1.6672 23 1 5.7011 0.3875 -2.1386 24 1 7.1688 -1.2544 -1.0470 25 1 6.2551 -2.8838 0.5459 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307685519.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = 129.862763 kcal Electronic energy + Delta-G solvation = -13766.571083 eV Core-core repulsion = 11361.368860 eV Total energy + Delta-G solvation = -2405.202223 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.06733 -38.05653 -34.05304 -33.59852 -32.39365 -30.68955 -29.20233 -25.60397 -23.77149 -22.75115 -21.39282 -20.34306 -18.23350 -17.48052 -16.26271 -15.90609 -15.06410 -14.27429 -14.00763 -13.28819 -12.89543 -12.34507 -12.17727 -11.92975 -11.48060 -11.24748 -11.01698 -10.66821 -10.63715 -10.14842 -10.01490 -9.83440 -9.60120 -9.35150 -7.95585 -7.66574 -7.13930 -4.67454 1.51907 2.42595 2.53530 2.97402 3.07988 3.09587 3.17354 3.39853 3.80475 4.32576 5.11311 5.17583 5.28908 5.62883 5.84203 6.17425 6.18417 6.40733 6.45532 6.59913 6.89650 6.99907 7.22061 7.30031 7.46353 7.62432 7.81064 8.26810 8.39006 8.60933 9.50589 9.83909 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.014296 C = 0.009811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.907639 B = 1958.109053 C = 2853.306362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.079 3.921 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.385 4.385 8 H 0.125 0.875 9 C 0.109 3.891 10 C -0.220 4.220 11 C -0.062 4.062 12 C -0.249 4.249 13 C -0.042 4.042 14 C -0.177 4.177 15 C 0.286 3.714 16 N -0.290 5.290 17 N -0.086 5.086 18 N -0.130 5.130 19 N -0.441 5.441 20 H 0.444 0.556 21 H 0.292 0.708 22 H 0.110 0.890 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.426 0.372 -1.258 8.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.412 4.412 8 H 0.142 0.858 9 C 0.103 3.897 10 C -0.239 4.239 11 C -0.081 4.081 12 C -0.269 4.269 13 C -0.063 4.063 14 C -0.184 4.184 15 C 0.015 3.985 16 N -0.141 5.141 17 N -0.082 5.082 18 N -0.116 5.116 19 N -0.171 5.171 20 H 0.290 0.710 21 H 0.102 0.898 22 H 0.127 0.873 23 H 0.117 0.883 24 H 0.119 0.881 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.857 -0.144 -0.353 6.867 hybrid contribution 1.668 0.859 -0.585 1.965 sum 8.524 0.716 -0.939 8.606 Atomic orbital electron populations 1.69614 1.08311 1.30978 1.30518 1.26406 0.94911 1.01991 0.91128 0.86314 0.81080 0.79271 0.79424 1.19109 1.21344 1.16607 1.20163 0.91243 0.96970 1.32854 0.85796 1.17454 0.92904 0.89805 0.89511 1.20935 0.95321 1.04192 1.03413 1.20503 0.93690 0.96651 0.97303 1.20206 0.98289 1.02233 1.06126 1.20536 0.92745 0.96835 0.96171 1.17187 0.92542 1.03697 1.04985 1.24379 0.88105 0.89973 0.95993 1.75882 1.13990 1.13745 1.10490 1.78405 1.13274 1.03277 1.13258 1.78521 0.96884 1.21212 1.14954 1.46320 1.14335 1.22853 1.33577 0.70959 0.89751 0.87254 0.88272 0.88149 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.60 13.92 55.56 0.77 -18.82 15 2 C 0.08 1.96 5.45 -17.31 -0.09 1.86 15 3 Si 0.91 19.34 24.50 -169.99 -4.16 15.17 15 4 H -0.27 -5.29 6.55 56.52 0.37 -4.92 15 5 H -0.29 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.24 -5.28 6.92 56.52 0.39 -4.89 15 7 C -0.39 -9.95 8.38 -37.90 -0.32 -10.27 15 8 H 0.12 3.50 6.11 -52.49 -0.32 3.18 15 9 C 0.11 2.59 5.09 -106.54 -0.54 2.04 15 10 C -0.22 -4.75 7.08 -39.28 -0.28 -5.03 15 11 C -0.06 -1.18 9.96 -39.97 -0.40 -1.58 15 12 C -0.25 -4.45 10.03 -39.39 -0.40 -4.84 15 13 C -0.04 -0.77 9.71 -39.25 -0.38 -1.15 15 14 C -0.18 -3.84 5.93 -104.30 -0.62 -4.46 15 15 C 0.29 6.19 7.85 -154.39 -1.21 4.98 15 16 N -0.29 -7.13 9.42 32.40 0.31 -6.83 15 17 N -0.09 -2.01 13.40 60.35 0.81 -1.20 15 18 N -0.13 -2.60 13.45 60.35 0.81 -1.79 15 19 N -0.44 -7.85 6.99 32.37 0.23 -7.62 15 20 H 0.44 5.72 8.25 -190.65 -1.57 4.15 15 21 H 0.29 6.61 8.29 -40.82 -0.34 6.27 15 22 H 0.11 2.33 4.69 -52.49 -0.25 2.08 15 23 H 0.10 1.59 8.06 -52.49 -0.42 1.17 15 24 H 0.10 1.51 8.06 -52.49 -0.42 1.09 15 25 H 0.09 1.33 7.33 -52.49 -0.38 0.94 15 LS Contribution 222.54 15.07 3.35 3.35 Total: -1.00 -27.93 222.54 -4.67 -32.60 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.55 Total: 3.57 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -4.24 Total: -18.44 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 2.93 Total: -36.26 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.16 Total: 15.17 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -27.93 -4.67 -32.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685519.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.462 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds