Wall clock time and date at job start Mon Mar 30 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46826 * 2 1 4 4 C 1.50697 * 109.47174 * 240.00354 * 2 1 3 5 5 H 1.08000 * 120.00139 * 335.24586 * 4 2 1 6 6 C 1.37872 * 120.00232 * 155.25352 * 4 2 1 7 7 N 1.31517 * 119.99764 * 355.14315 * 6 4 2 8 8 Si 1.86797 * 120.00358 * 175.14555 * 6 4 2 9 9 H 1.48496 * 109.47267 * 59.99410 * 8 6 4 10 10 H 1.48496 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46778 * 299.99544 * 8 6 4 12 12 O 1.45199 * 109.47046 * 120.00188 * 2 1 3 13 13 C 1.34228 * 117.00150 * 270.00256 * 12 2 1 14 14 O 1.20832 * 119.99639 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00620 * 180.02562 * 13 12 2 16 16 F 1.39903 * 112.84487 * 45.32728 * 15 13 12 17 17 C 1.53785 * 113.61502 * 274.13788 * 15 13 12 18 18 C 1.53956 * 87.01695 * 220.04212 * 17 15 13 19 19 C 1.53779 * 113.61880 * 176.52640 * 15 13 12 20 20 H 1.08997 * 109.46863 * 175.02999 * 1 2 3 21 21 H 1.08994 * 109.47146 * 295.03035 * 1 2 3 22 22 H 1.09003 * 109.47060 * 55.03184 * 1 2 3 23 23 H 0.97005 * 120.00318 * 5.12622 * 7 6 4 24 24 H 1.08999 * 113.60878 * 334.56546 * 17 15 13 25 25 H 1.08998 * 113.61416 * 105.46594 * 17 15 13 26 26 H 1.09000 * 113.53440 * 270.80854 * 18 17 15 27 27 H 1.09001 * 113.73858 * 139.93998 * 18 17 15 28 28 H 1.09000 * 113.61251 * 254.52848 * 19 15 13 29 29 H 1.09002 * 113.61352 * 25.35152 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 1.4116 -1.4456 -1.7208 6 6 3.2845 -0.4217 -1.7302 7 7 4.0019 0.5399 -1.1915 8 14 3.9621 -1.3964 -3.1725 9 1 3.0629 -1.2373 -4.3436 10 1 5.3163 -0.8940 -3.5169 11 1 4.0453 -2.8326 -2.8039 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0639 2.2811 14 8 1.9981 1.2518 2.2504 15 6 2.7193 -0.5771 3.5492 16 9 3.7806 -1.4612 3.3275 17 6 1.6015 -1.1643 4.4271 18 6 2.3771 -0.6180 5.6397 19 6 2.9801 0.4261 4.6852 20 1 -0.3633 -1.0238 -0.0890 21 1 -0.3633 0.4348 0.9311 22 1 -0.3633 0.5890 -0.8422 23 1 3.6830 0.9962 -0.3971 24 1 0.6328 -0.6876 4.2774 25 1 1.5482 -2.2526 4.3961 26 1 3.1099 -1.3190 6.0394 27 1 1.7387 -0.1872 6.4110 28 1 4.0381 0.6199 4.8621 29 1 2.3900 1.3391 4.6055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308143275.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:32 Heat of formation + Delta-G solvation = -127.713712 kcal Electronic energy + Delta-G solvation = -15052.526231 eV Core-core repulsion = 12276.633021 eV Total energy + Delta-G solvation = -2775.893210 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.55586 -39.65026 -37.49361 -35.53150 -33.20256 -30.24386 -26.68364 -25.88614 -24.82356 -22.16457 -20.53121 -19.23487 -17.54585 -17.31864 -16.05883 -15.73639 -15.10610 -14.46443 -14.37127 -13.83701 -13.70516 -13.22198 -12.55851 -12.52822 -12.03022 -11.58373 -11.42845 -11.20555 -11.05611 -10.98097 -10.87538 -10.37618 -10.33467 -10.18573 -9.58786 -9.34094 -8.81574 -8.51506 -6.65031 -4.45335 2.81104 3.30763 3.37189 3.56738 3.56939 4.15814 4.31171 4.36586 4.62550 4.71833 5.03613 5.40949 5.56389 5.65261 5.74588 5.78248 5.87167 5.95982 6.18415 6.32154 6.37049 6.45225 6.77017 7.00667 7.58111 7.88433 8.17863 8.54389 8.72637 9.34484 10.71000 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.041127 B = 0.009106 C = 0.008389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.654327 B = 3074.225682 C = 3336.810329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.176 3.824 3 H 0.053 0.947 4 C -0.588 4.588 5 H 0.063 0.937 6 C 0.029 3.971 7 N -0.878 5.878 8 Si 1.076 2.924 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.282 1.282 12 O -0.347 6.347 13 C 0.444 3.556 14 O -0.516 6.516 15 C 0.093 3.907 16 F -0.171 7.171 17 C -0.144 4.144 18 C -0.138 4.138 19 C -0.139 4.139 20 H 0.050 0.950 21 H 0.032 0.968 22 H 0.061 0.939 23 H 0.274 0.726 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -2.705 10.183 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.126 3.874 3 H 0.070 0.930 4 C -0.623 4.623 5 H 0.082 0.918 6 C -0.180 4.180 7 N -0.512 5.512 8 Si 0.902 3.098 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.208 1.208 12 O -0.263 6.263 13 C 0.286 3.714 14 O -0.407 6.407 15 C 0.073 3.927 16 F -0.151 7.151 17 C -0.181 4.181 18 C -0.175 4.175 19 C -0.177 4.177 20 H 0.069 0.931 21 H 0.051 0.949 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.119 0.881 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.201 -2.484 9.065 9.653 hybrid contribution -1.202 0.075 1.020 1.578 sum -3.403 -2.409 10.085 10.913 Atomic orbital electron populations 1.22001 0.97347 1.00974 0.99853 1.20945 0.90653 0.95375 0.80463 0.92968 1.22044 1.04647 1.28094 1.07562 0.91835 1.26267 0.93595 0.95573 1.02560 1.70783 1.40623 1.18797 1.20966 0.83458 0.76509 0.75542 0.74280 1.20911 1.20376 1.20785 1.87108 1.74353 1.44593 1.20204 1.23473 0.75458 0.86323 0.86176 1.90561 1.49743 1.16273 1.84168 1.21900 0.87525 0.91231 0.91996 1.92902 1.57057 1.69470 1.95708 1.23507 0.97571 1.02708 0.94343 1.22901 0.99728 0.98361 0.96506 1.23491 1.03698 0.98197 0.92312 0.93113 0.94923 0.91989 0.91407 0.88087 0.89131 0.89321 0.90089 0.89605 0.87006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.53 37.16 0.35 -2.89 15 2 C 0.18 4.75 2.28 -27.88 -0.06 4.69 15 3 H 0.05 1.53 5.69 -51.93 -0.30 1.24 15 4 C -0.59 -16.78 8.70 -34.44 -0.30 -17.08 15 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 6 C 0.03 0.84 5.45 -17.82 -0.10 0.74 15 7 N -0.88 -26.97 13.63 55.43 0.76 -26.22 15 8 Si 1.08 24.76 29.91 -169.99 -5.08 19.67 15 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 12 O -0.35 -9.11 9.86 -39.25 -0.39 -9.50 15 13 C 0.44 10.31 7.30 36.01 0.26 10.58 15 14 O -0.52 -12.66 15.10 -18.75 -0.28 -12.94 15 15 C 0.09 1.72 2.04 -90.96 -0.19 1.53 15 16 F -0.17 -3.45 17.23 2.25 0.04 -3.41 15 17 C -0.14 -1.99 7.54 -25.82 -0.19 -2.19 15 18 C -0.14 -1.57 8.07 -25.83 -0.21 -1.78 15 19 C -0.14 -2.03 7.32 -25.92 -0.19 -2.22 15 20 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.03 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.27 8.65 6.66 -40.82 -0.27 8.38 15 24 H 0.10 1.33 8.09 -51.93 -0.42 0.91 15 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 29 H 0.11 1.64 7.40 -51.93 -0.38 1.25 15 LS Contribution 257.92 15.07 3.89 3.89 Total: -1.00 -32.17 257.92 -5.23 -37.40 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.54 Total: -0.27 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -0.62 Total: -8.62 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.76 Total: -26.22 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.67 Total: -22.44 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.04 Total: -3.41 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.67 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.17 -5.23 -37.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308143275.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.317 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds