Wall clock time and date at job start Mon Mar 30 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46826 * 2 1 4 4 C 1.50697 * 109.47174 * 240.00354 * 2 1 3 5 5 H 1.08000 * 120.00139 * 335.24586 * 4 2 1 6 6 C 1.37872 * 120.00232 * 155.25352 * 4 2 1 7 7 N 1.31517 * 119.99764 * 355.14315 * 6 4 2 8 8 Si 1.86797 * 120.00358 * 175.14555 * 6 4 2 9 9 H 1.48496 * 109.47267 * 59.99410 * 8 6 4 10 10 H 1.48496 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46778 * 299.99544 * 8 6 4 12 12 O 1.45199 * 109.47046 * 120.00188 * 2 1 3 13 13 C 1.34228 * 117.00150 * 270.00256 * 12 2 1 14 14 O 1.20832 * 119.99639 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00620 * 180.02562 * 13 12 2 16 16 F 1.39903 * 112.84487 * 45.32728 * 15 13 12 17 17 C 1.53785 * 113.61502 * 274.13788 * 15 13 12 18 18 C 1.53956 * 87.01695 * 220.04212 * 17 15 13 19 19 C 1.53779 * 113.61880 * 176.52640 * 15 13 12 20 20 H 1.08997 * 109.46863 * 175.02999 * 1 2 3 21 21 H 1.08994 * 109.47146 * 295.03035 * 1 2 3 22 22 H 1.09003 * 109.47060 * 55.03184 * 1 2 3 23 23 H 0.97005 * 120.00318 * 5.12622 * 7 6 4 24 24 H 1.08999 * 113.60878 * 334.56546 * 17 15 13 25 25 H 1.08998 * 113.61416 * 105.46594 * 17 15 13 26 26 H 1.09000 * 113.53440 * 270.80854 * 18 17 15 27 27 H 1.09001 * 113.73858 * 139.93998 * 18 17 15 28 28 H 1.09000 * 113.61251 * 254.52848 * 19 15 13 29 29 H 1.09002 * 113.61352 * 25.35152 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 1.4116 -1.4456 -1.7208 6 6 3.2845 -0.4217 -1.7302 7 7 4.0019 0.5399 -1.1915 8 14 3.9621 -1.3964 -3.1725 9 1 3.0629 -1.2373 -4.3436 10 1 5.3163 -0.8940 -3.5169 11 1 4.0453 -2.8326 -2.8039 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0639 2.2811 14 8 1.9981 1.2518 2.2504 15 6 2.7193 -0.5771 3.5492 16 9 3.7806 -1.4612 3.3275 17 6 1.6015 -1.1643 4.4271 18 6 2.3771 -0.6180 5.6397 19 6 2.9801 0.4261 4.6852 20 1 -0.3633 -1.0238 -0.0890 21 1 -0.3633 0.4348 0.9311 22 1 -0.3633 0.5890 -0.8422 23 1 3.6830 0.9962 -0.3971 24 1 0.6328 -0.6876 4.2774 25 1 1.5482 -2.2526 4.3961 26 1 3.1099 -1.3190 6.0394 27 1 1.7387 -0.1872 6.4110 28 1 4.0381 0.6199 4.8621 29 1 2.3900 1.3391 4.6055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308143275.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:32 Heat of formation + Delta-G solvation = -147.354498 kcal Electronic energy + Delta-G solvation = -15053.377919 eV Core-core repulsion = 12276.633021 eV Total energy + Delta-G solvation = -2776.744898 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.07932 -41.48644 -38.90946 -37.40613 -35.34689 -32.25716 -28.13114 -27.04170 -26.93206 -23.94874 -22.26531 -20.63195 -19.45880 -19.25674 -17.76835 -17.34288 -16.67934 -16.08883 -15.97531 -15.68250 -15.49480 -14.79269 -14.28552 -14.02819 -13.58636 -13.40045 -13.11070 -12.71531 -12.65066 -12.58965 -12.37906 -12.01286 -11.96540 -11.56222 -11.46806 -11.24871 -10.84979 -10.65999 -8.92644 -6.74523 0.99273 1.48484 1.53672 1.78834 1.84395 2.46113 2.90386 2.96529 3.05467 3.48311 3.57193 3.77267 4.21338 4.36197 4.44619 4.51053 4.54646 4.60007 4.76268 4.78351 4.87868 4.94830 5.11376 5.27956 5.55807 5.77397 5.93199 6.23629 6.77235 7.15848 8.42129 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.041127 B = 0.009106 C = 0.008389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.654327 B = 3074.225682 C = 3336.810329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.170 3.830 3 H 0.017 0.983 4 C -0.607 4.607 5 H 0.071 0.929 6 C -0.022 4.022 7 N -0.909 5.909 8 Si 1.126 2.874 9 H -0.256 1.256 10 H -0.281 1.281 11 H -0.266 1.266 12 O -0.366 6.366 13 C 0.433 3.567 14 O -0.537 6.537 15 C 0.070 3.930 16 F -0.185 7.185 17 C -0.136 4.136 18 C -0.111 4.111 19 C -0.137 4.137 20 H 0.063 0.937 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.253 0.747 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 -3.981 11.264 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.118 3.882 3 H 0.035 0.965 4 C -0.643 4.643 5 H 0.089 0.911 6 C -0.223 4.223 7 N -0.545 5.545 8 Si 0.944 3.056 9 H -0.181 1.181 10 H -0.206 1.206 11 H -0.190 1.190 12 O -0.282 6.282 13 C 0.276 3.724 14 O -0.428 6.428 15 C 0.051 3.949 16 F -0.165 7.165 17 C -0.173 4.173 18 C -0.148 4.148 19 C -0.175 4.175 20 H 0.082 0.918 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.110 0.890 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.944 -3.759 10.172 11.237 hybrid contribution -1.029 0.517 0.757 1.378 sum -3.973 -3.243 10.929 12.072 Atomic orbital electron populations 1.21896 0.94089 1.02162 1.00981 1.20872 0.93212 0.93270 0.80810 0.96548 1.22402 1.05023 1.28074 1.08787 0.91053 1.27922 0.94087 0.95397 1.04916 1.70941 1.41484 1.20852 1.21195 0.82882 0.76137 0.74707 0.71915 1.18067 1.20639 1.19041 1.86989 1.75139 1.44958 1.21103 1.24529 0.74786 0.86251 0.86794 1.90533 1.50549 1.17170 1.84597 1.22515 0.89293 0.93203 0.89934 1.92868 1.57881 1.70009 1.95742 1.23620 0.96508 1.03514 0.93675 1.22880 0.99473 0.96779 0.95679 1.23596 1.04528 0.98179 0.91194 0.91760 0.93722 0.90972 0.93679 0.87358 0.87896 0.87762 0.86697 0.88993 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 9.53 71.98 0.69 -5.29 15 2 C 0.17 9.36 2.28 29.85 0.07 9.43 15 3 H 0.02 1.02 5.69 -2.39 -0.01 1.01 15 4 C -0.61 -35.07 8.70 25.60 0.22 -34.84 15 5 H 0.07 3.91 7.81 -2.91 -0.02 3.88 15 6 C -0.02 -1.28 5.45 84.65 0.46 -0.82 15 7 N -0.91 -57.81 13.63 21.45 0.29 -57.52 15 8 Si 1.13 49.51 29.91 68.60 2.05 51.56 15 9 H -0.26 -10.11 7.11 99.48 0.71 -9.41 15 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 11 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 12 O -0.37 -19.63 9.86 -51.40 -0.51 -20.13 15 13 C 0.43 20.47 7.30 71.24 0.52 20.99 15 14 O -0.54 -27.05 15.10 21.95 0.33 -26.71 15 15 C 0.07 2.52 2.04 -11.01 -0.02 2.50 15 16 F -0.18 -7.38 17.23 44.97 0.77 -6.61 15 17 C -0.14 -3.40 7.54 31.18 0.24 -3.16 15 18 C -0.11 -2.10 8.07 31.18 0.25 -1.85 15 19 C -0.14 -3.74 7.32 31.12 0.23 -3.51 15 20 H 0.06 2.66 8.14 -2.39 -0.02 2.64 15 21 H 0.04 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.07 3.02 8.14 -2.39 -0.02 3.00 15 23 H 0.25 16.83 6.66 -92.70 -0.62 16.22 15 24 H 0.11 2.55 8.09 -2.39 -0.02 2.54 15 25 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 15 27 H 0.11 1.49 8.14 -2.39 -0.02 1.47 15 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 29 H 0.11 3.03 7.40 -2.39 -0.02 3.01 15 Total: -1.00 -72.17 257.92 6.89 -65.28 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.29 Total: 10.68 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 2.65 Total: -16.55 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.29 Total: -57.52 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.18 Total: -46.85 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 0.77 Total: -6.61 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.05 Total: 51.56 kcal Total: -72.17 6.89 -65.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308143275.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.075 kcal (2) G-P(sol) polarization free energy of solvation -72.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds